Gene

KWMTBOMO03469  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006359

Annotation

PREDICTED:_WD_repeat-containing_protein_36_[Amyelois_transitella]

Location

Bomo_Chr6(-):8785591-8788822      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.348 Nuclear   Reliability : 1.559

CDS

ATGAAAATGGGTCAGCACATACTGAAGGCTCCAGGCCTTATAAAAGGAGATGTTGCAACATGCCTCACTGTCACTAACTGTGGAAACTTTGTTATAATCGGTTATAGTAATGGACAAGTACACAGATTCAACATGCAATCAGGAATACACAGAGGGACTTTTGGGAATGAGAAGAAAATAGCACACAAAAGTGCCGTCAGAGGAGTTGAGACTGATTTATGTAACCAAAAGGCTATCACTGCAGGTGCAGATAATAAACTGAAATTCTGGTACTTTAAGAATTTAACTGCACCATACTCAGTTATGCGATTAGAAGAGTCAGTTTCAATGACTAAATGCCACAGAGAGAGTGCCTTGTTAGCATTGGCTAATGAGGATTTCAGTATTACTATAGTTGATATAGACACAGTGAATATAGTGAGAAAATTTGAGGGACATGCAGGAAAAATAAATGACATTGATTTTGACCACCAAAGCAGGTGGCTGATTAGTTCTTCAATGGATTCTACAATATGTACATGGGACATACCTAGTGGTGAACTTGTAGATATATTTGTAACTGAGCGACCATGTACATCCTTAAGCATGTCACCTACTGGCGATTACTTAGCCACGACGCATGTCGGTGATATAGGAGTGTTTCTGTGGGCTAACAAACTTTTGTATGAAAAGATATTCCTGAAACCAATTGACCGATATTCTGTGGATATACCTAAACTTGCTCTGCCTACATTGACACCAAAAGATCCATGTCAAAATGAAACAGAAATCATTGAAGTCTGTGAAGAACCAGAATACAAATCTCCCATCCAAATCAGTGAAGAATTAATAACTTTGTCGAATCAGCCAACGTCGCGATGGTTGAATTTATTAAACCTCGATATTGTTAAAAAACGTAATAAGCCAAAAACACCTCTGACAATACCAAAATCGGCACCTTTCTTCCTGCCCACCATACCTAGCTTAGAGCTGGAATTTGACGTAGAAAAAGATAAAGAACACAATAGTAATTCTAAGTTATTGATACCCGAATCTCTGTCGACGTTGTCAGCATTCGCCAAGAAACTAGTATCTTCTGATAGTAATGAAGACTTCAGTAAATGCGTTGAGATTTTGAAGTCTTTATCCTCGTCGGCTATTGAAGTCGAAATCAACAGTATGGCGCCTGACATGGGCGGTTCTATAGACGTAATGGTTAAATTCTTGCAAATGTTAGAGACTACATTGAACAGTAACAGAGATTTCGAATTAGCTCAATCTTATTTAAGTTTATTTTTAAAATCTCACACAAAGGTTATATCCGAGGAAAAAGAACTGCGTGATTCATTGATTTCAGTAGAAGAAGCGGCCACAGAATCATGGTCGAAATTACAAACTCAGTTGATGTATAATATCTGTATAGTTAAGGCATTAAAGGACATGTAA

Protein

MKMGQHILKAPGLIKGDVATCLTVTNCGNFVIIGYSNGQVHRFNMQSGIHRGTFGNEKKIAHKSAVRGVETDLCNQKAITAGADNKLKFWYFKNLTAPYSVMRLEESVSMTKCHRESALLALANEDFSITIVDIDTVNIVRKFEGHAGKINDIDFDHQSRWLISSSMDSTICTWDIPSGELVDIFVTERPCTSLSMSPTGDYLATTHVGDIGVFLWANKLLYEKIFLKPIDRYSVDIPKLALPTLTPKDPCQNETEIIEVCEEPEYKSPIQISEELITLSNQPTSRWLNLLNLDIVKKRNKPKTPLTIPKSAPFFLPTIPSLELEFDVEKDKEHNSNSKLLIPESLSTLSAFAKKLVSSDSNEDFSKCVEILKSLSSSAIEVEINSMAPDMGGSIDVMVKFLQMLETTLNSNRDFELAQSYLSLFLKSHTKVISEEKELRDSLISVEEAATESWSKLQTQLMYNICIVKALKDM

Uniprot

H9JA14   A0A2H1VSE6   A0A2W1BK48   A0A2A4J6U5   A0A194RNN4   A0A194PWS8   + More
A0A212F654   A0A2J7Q9L4   A0A0C9PWV5   A0A067RF02   A0A0L0CH26   A0A0M8ZXP0   A0A2P8XU64   T1PI57   A0A1I8MSS4   A0A195F115   D6WA27   A0A0L7QLK8   A0A195DXM2   V5HB96   A0A151ILD5   A0A088AG54   A0A2A3EFB5   A0A151X8B7   A0A0M4EI30   A0A232FHL5   K7JGZ9   A0A158NP15   E2BZ01   A0A1B6CU23   A0A1Y1JXJ9   A0A154NWL2   F4W8X4   A0A195BYD7   A0A131XG89   M7BPT4   Q16W76   A0A1S4FLX1   A0A1E1XJ16   A0A026VX66   A0A1W4XNP5   A0A1E1XB67   A0A3L8DHG1   E9IED0   A0A131YWR2   U4UPS4   N6TDF3   B3LX80   A0A093FMM8   A0A0B6Z6J4   A0A147BQV4   A0A094L2W2   B4M6B4   A0A091KRF5   A0A1Q3EZB5   A0A091G160   A0A1U7RZV2   A0A0J7KNA4   A0A0A0B0G0   A0A310SV31   A0A087RBK8   A0A182H6A8   A0A093I667   A0A336LZ66   A0A224ZBY7   A0A151PI76   A0A1S3H3P4   L7M9G2   A0A091JH06   A0A091J9Y6   B4JI72   A0A2I0UMN5   A0A034VP19   A0A336L6A0   A0A2P4TBY1   A0A091WI26   A0A093P012   Q960D6   A0A1B6JF22   A0A2K5S518   A0A2M4AHX6   A0A093PPW6   H0YRW1   A0A218UUH1   A0A2R2MKY5   Q9VFV8   A0A093CM77   A0A0K8UBZ4   A0A1W4V3D6   A0A094N2X5   A0A093QUJ4   A0A091UME9   A0A2I0M8X8   A0A2M4BCR9   E2ABT5   A0A2M4BCP1   A0A1B6FF83   R0K351   U3IZN1  

Pubmed

19121390    28756777    26354079    22118469    24845553    26108605    + More
29403074    25315136    18362917    19820115    25765539    28648823    20075255    21347285    20798317    28004739    21719571    28049606    23624526    17510324    29209593    24508170    28503490    30249741    21282665    26830274    23537049    17994087    29652888    26483478    28797301    22293439    25576852    25348373    20360741    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23371554    23749191   

EMBL

BABH01009394    ODYU01004177    SOQ43765.1    KZ150004    PZC75258.1    NWSH01002631    + More
PCG67805.1    KQ459896    KPJ19448.1    KQ459589    KPI97473.1    AGBW02010074    OWR49220.1    NEVH01016348    PNF25272.1    GBYB01005988    JAG75755.1    KK852510    KDR22347.1    JRES01000409    KNC31502.1    KQ435801    KOX73225.1    PYGN01001339    PSN35551.1    KA648451    AFP63080.1    KQ981891    KYN33794.1    KQ971312    EEZ98071.1    KQ414914    KOC59513.1    KQ980167    KYN17364.1    GANP01012296    JAB72172.1    KQ977120    KYN05563.1    KZ288262    PBC30427.1    KQ982422    KYQ56621.1    CP012526    ALC46221.1    NNAY01000180    OXU30241.1    ADTU01022032    GL451538    EFN79073.1    GEDC01020259    JAS17039.1    GEZM01097920    JAV54042.1    KQ434773    KZC03983.1    GL887974    EGI69333.1    KQ976394    KYM93320.1    GEFH01002984    JAP65597.1    KB515362    EMP39921.1    CH477573    EAT38834.1    GFAA01004134    JAT99300.1    KK107648    EZA48352.1    GFAC01002710    JAT96478.1    QOIP01000008    RLU19781.1    GL762576    EFZ21087.1    GEDV01005469    JAP83088.1    KB632309    ERL92025.1    APGK01042225    KB741002    ENN75768.1    CH902617    EDV41680.1    KK634978    KFV57895.1    HACG01017112    CEK63977.1    GEGO01002257    JAR93147.1    KL274746    KFZ65698.1    CH940652    EDW59190.1    KK751966    KFP42078.1    GFDL01014467    JAV20578.1    KL447644    KFO75723.1    LBMM01005134    KMQ91792.1    KL884777    KGM00285.1    KQ760166    OAD61660.1    KL226279    KFM10862.1    JXUM01113766    KQ565724    KXJ70732.1    KL206890    KFV86692.1    UFQT01000244    SSX22311.1    GFPF01013366    MAA24512.1    AKHW03000179    KYO48797.1    GACK01005246    JAA59788.1    KK500856    KFP10961.1    KL218793    KFP08521.1    CH916369    EDV92953.1    KZ505682    PKU47283.1    GAKP01015090    JAC43862.1    UFQS01001136    UFQT01001136    SSX09170.1    SSX29080.1    PPHD01002783    POI33864.1    KK733913    KFR01236.1    KL225272    KFW70373.1    AY052114    AAK93538.1    GECU01009968    JAS97738.1    GGFK01007074    MBW40395.1    KL670372    KFW78888.1    ABQF01032508    ABQF01032509    ABQF01032510    MUZQ01000124    OWK57395.1    AE014297    BT016079    AAF54941.1    AAV36964.1    KL462590    KFV14044.1    GDHF01028206    JAI24108.1    KL354261    KFZ61046.1    KL424985    KFW90040.1    KL409831    KFQ92119.1    AKCR02000029    PKK26133.1    GGFJ01001676    MBW50817.1    GL438356    EFN69112.1    GGFJ01001678    MBW50819.1    GECZ01020908    JAS48861.1    KB742782    EOB04466.1    ADON01043173    ADON01043174    ADON01043175    ADON01043176    ADON01043177    ADON01043178    ADON01043179    ADON01043180    ADON01043181    ADON01043182   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000235965    + More
UP000027135    UP000037069    UP000053105    UP000245037    UP000095301    UP000078541    UP000007266    UP000053825    UP000078492    UP000078542    UP000005203    UP000242457    UP000075809    UP000092553    UP000215335    UP000002358    UP000005205    UP000008237    UP000076502    UP000007755    UP000078540    UP000031443    UP000008820    UP000053097    UP000192223    UP000279307    UP000030742    UP000019118    UP000007801    UP000008792    UP000053760    UP000189705    UP000036403    UP000053858    UP000053286    UP000069940    UP000249989    UP000053584    UP000050525    UP000085678    UP000053119    UP000054308    UP000001070    UP000053605    UP000054081    UP000233040    UP000053258    UP000007754    UP000197619    UP000000803    UP000192221    UP000053283    UP000053872    UP000000311    UP000016666   

PRIDE

H9JA14    Q960D6    Q9VFV8   

Pfam

PF04192   Utp21        + More
PF00400   WD40
PF12894   ANAPC4_WD40
PF13360   PQQ_2

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR007319   SSU_processome_Utp21       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR024977   Apc4_WD40_dom       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011043   Gal_Oxase/kelch_b-propeller       
IPR020472   G-protein_beta_WD-40_rep       
IPR002372   PQQ_repeat       
IPR020719   RNA3'_term_phos_cycl-like_CS       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50965   SSF50965       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JA14   A0A2H1VSE6   A0A2W1BK48   A0A2A4J6U5   A0A194RNN4   A0A194PWS8   + More
A0A212F654   A0A2J7Q9L4   A0A0C9PWV5   A0A067RF02   A0A0L0CH26   A0A0M8ZXP0   A0A2P8XU64   T1PI57   A0A1I8MSS4   A0A195F115   D6WA27   A0A0L7QLK8   A0A195DXM2   V5HB96   A0A151ILD5   A0A088AG54   A0A2A3EFB5   A0A151X8B7   A0A0M4EI30   A0A232FHL5   K7JGZ9   A0A158NP15   E2BZ01   A0A1B6CU23   A0A1Y1JXJ9   A0A154NWL2   F4W8X4   A0A195BYD7   A0A131XG89   M7BPT4   Q16W76   A0A1S4FLX1   A0A1E1XJ16   A0A026VX66   A0A1W4XNP5   A0A1E1XB67   A0A3L8DHG1   E9IED0   A0A131YWR2   U4UPS4   N6TDF3   B3LX80   A0A093FMM8   A0A0B6Z6J4   A0A147BQV4   A0A094L2W2   B4M6B4   A0A091KRF5   A0A1Q3EZB5   A0A091G160   A0A1U7RZV2   A0A0J7KNA4   A0A0A0B0G0   A0A310SV31   A0A087RBK8   A0A182H6A8   A0A093I667   A0A336LZ66   A0A224ZBY7   A0A151PI76   A0A1S3H3P4   L7M9G2   A0A091JH06   A0A091J9Y6   B4JI72   A0A2I0UMN5   A0A034VP19   A0A336L6A0   A0A2P4TBY1   A0A091WI26   A0A093P012   Q960D6   A0A1B6JF22   A0A2K5S518   A0A2M4AHX6   A0A093PPW6   H0YRW1   A0A218UUH1   A0A2R2MKY5   Q9VFV8   A0A093CM77   A0A0K8UBZ4   A0A1W4V3D6   A0A094N2X5   A0A093QUJ4   A0A091UME9   A0A2I0M8X8   A0A2M4BCR9   E2ABT5   A0A2M4BCP1   A0A1B6FF83   R0K351   U3IZN1  

PDB

5OQL     E-value=1.28717e-55,     Score=548

KEGG

101735526    K14554 U3 small nucleolar RNA-associated protein 21 | (RefSeq) WD repeat-containing protein 36

GO

GO:0032040   GO:0006364   GO:0034388   GO:0001895   GO:0030516   GO:0005730   GO:0005515   GO:0016491   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

474

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.20816

Exp number, first 60 AAs:

1.2009

Total prob of N-in:

0.05839

outside

1  -  474

 

 

Pi

185.638403

Theta

167.909422

Tajima's D

0.39215

CLR

0.67331

CSRT

0.487125643717814

Interpretation

Uncertain