Gene

KWMTBOMO03461

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(+):8443263-8445844      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS       + More
Probable RNA-directed DNA polymerase from transposon X-element      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.22 Nuclear   Reliability : 1.284 PlasmaMembrane   Reliability : 1.154

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTTGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGACAACCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACACAATATGCGTTAGCATTCATAGCAATTATTTGTTCAAATTTTAAGAGAATATTTGGGGAAATCAATAGTAATAGTATCTCGCGTCAGTAA

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSTRISSRIRRRNLTPPITLFRQPIPWARKVKYLGVTLDASMTQYALAFIAIICSNFKRIFGEINSNSISRQ

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   X1WLB2   K7IN67   A0A023EYS8   J9LC21   A0A2S2QEE0   X1WNI2   V5GNF3   A0A2S2PPK8   J9JS95   A0A2S2NJB5   A0A2J7RE85   X1WZH0   A0A2J7PU96   A0A2J7QR37   A0A2J7QY69   J9LFC9   A0A2J7PBY3   J9KLB1   A0A224XF24   J9KPF1   A0A023EZE6   A0A2J7R7D0   A0A2S2PA10   A0A1Y1K0C8   A0A2S2N6Q7   A0A224X7Z3   A0A2J7PP17   A0A224XI99   A0A2J7Q6J2   A0A224XB44   J9M522   A0A224X6Q4   A0A2S2PJG2   A0A087U3K8   A0A087UCW3   A0A224X6S1   A0A2S2NH02   X1WXE6   A0A2S2N814   A0A224X6U5   A0A2S2R9D4   A0A2J7RMG0   A0A2S2P6S3   A0A1Y1LKN6   A0A224X6T4   A0A2J7PQB5   A0A087T3W0   A0A224X6W2   A0A2H8TF37   A0A224X746   A0A2S2NGV8   A0A2S2Q383   A0A2J7QB68   A0A1Y1KFR3   J9KSK5   A0A2S2Q352   A0A0V0G5B6   A0A2S2PEZ9   A0A2S2NPG3   A0A2M4CV52   A0A2A4IUM2   A0A224XJI0   A0A232ENU1   A0A224XIB0   A0A0H3UA66   A0A2H8TKI9   A0A2S2P698   Q95SX7   A0A2M4CV42   A0A2S2P7B2   A0A2S2Q2R8   A0A1Y1MT28   A0A2S2QDN9   A0A3N5Z7I3   A0A087UGF5   A0A0J7MYU2   Q07995   J9LYS0   A0A2S2P3X8   A0A224X6R6   A0A2S2PBB4   A0A2S2PX53   Q9NBX4   J9KKL3   A0A2S2NCK2   A0A142LX49  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    25474469    28648823    26812285    7753626    12537569    30086797    8387152    11405632    25527032   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    ABLF02042518    ABLF02057746    GBBI01004395    JAC14317.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01006359    MBY75562.1    ABLF02008153    ABLF02008462    ABLF02008464    GALX01005359    JAB63107.1    GGMR01018716    MBY31335.1    ABLF02028535    ABLF02028545    GGMR01004661    MBY17280.1    NEVH01005277    PNF39135.1    ABLF02034467    NEVH01021205    PNF19912.1    NEVH01011985    PNF31054.1    NEVH01009134    PNF33528.1    ABLF02023911    NEVH01027074    PNF13841.1    ABLF02040174    ABLF02040183    ABLF02055266    GFTR01008038    JAW08388.1    ABLF02041767    GBBI01004571    JAC14141.1    NEVH01006736    PNF36716.1    GGMR01013409    MBY26028.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GGMR01000226    MBY12845.1    GFTR01007929    JAW08497.1    NEVH01023280    PNF18085.1    GFTR01008256    JAW08170.1    NEVH01017470    PNF24199.1    GFTR01008262    JAW08164.1    ABLF02024246    GFTR01008279    JAW08147.1    GGMR01016905    MBY29524.1    KK118005    KFM71947.1    KK119261    KFM75202.1    GFTR01008271    JAW08155.1    GGMR01003864    MBY16483.1    ABLF02016634    GGMR01000676    MBY13295.1    GFTR01008251    JAW08175.1    GGMS01017365    MBY86568.1    NEVH01002556    PNF42024.1    GGMR01012443    MBY25062.1    GEZM01053022    JAV74219.1    GFTR01008261    JAW08165.1    NEVH01022639    PNF18527.1    KK113281    KFM59799.1    GFTR01008260    JAW08166.1    GFXV01000908    MBW12713.1    GFTR01008151    JAW08275.1    GGMR01003407    MBY16026.1    GGMS01002992    MBY72195.1    NEVH01016302    PNF25823.1    GEZM01084969    JAV60363.1    ABLF02014118    ABLF02014121    ABLF02054790    GGMS01002955    MBY72158.1    GECL01003538    JAP02586.1    GGMR01015412    MBY28031.1    GGMR01006408    MBY19027.1    GGFL01004957    MBW69135.1    NWSH01007753    PCG62823.1    GFTR01008257    JAW08169.1    NNAY01003095    OXU19992.1    GFTR01008246    JAW08180.1    KF280391    AIE77315.1    GFXV01002840    MBW14645.1    GGMR01012305    MBY24924.1    AY060438    AAL25477.1    GGFL01005012    MBW69190.1    GGMR01012676    MBY25295.1    GGMS01002786    MBY71989.1    GEZM01021881    JAV88842.1    GGMS01006655    MBY75858.1    RPOV01000134    RPJ78669.1    KK119692    KFM76444.1    LBMM01013518    KMQ85605.1    S59870    AAB26437.2    ABLF02041861    GGMR01011511    MBY24130.1    GFTR01008269    JAW08157.1    GGMR01014053    MBY26672.1    GGMS01000737    MBY69940.1    AF237761    AAF81411.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMR01002322    MBY14941.1    KU543685    AMS38375.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000002358    UP000235965    UP000054359    + More
UP000218220    UP000215335    UP000036403   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7    Q9NBX4   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   X1WLB2   K7IN67   A0A023EYS8   J9LC21   A0A2S2QEE0   X1WNI2   V5GNF3   A0A2S2PPK8   J9JS95   A0A2S2NJB5   A0A2J7RE85   X1WZH0   A0A2J7PU96   A0A2J7QR37   A0A2J7QY69   J9LFC9   A0A2J7PBY3   J9KLB1   A0A224XF24   J9KPF1   A0A023EZE6   A0A2J7R7D0   A0A2S2PA10   A0A1Y1K0C8   A0A2S2N6Q7   A0A224X7Z3   A0A2J7PP17   A0A224XI99   A0A2J7Q6J2   A0A224XB44   J9M522   A0A224X6Q4   A0A2S2PJG2   A0A087U3K8   A0A087UCW3   A0A224X6S1   A0A2S2NH02   X1WXE6   A0A2S2N814   A0A224X6U5   A0A2S2R9D4   A0A2J7RMG0   A0A2S2P6S3   A0A1Y1LKN6   A0A224X6T4   A0A2J7PQB5   A0A087T3W0   A0A224X6W2   A0A2H8TF37   A0A224X746   A0A2S2NGV8   A0A2S2Q383   A0A2J7QB68   A0A1Y1KFR3   J9KSK5   A0A2S2Q352   A0A0V0G5B6   A0A2S2PEZ9   A0A2S2NPG3   A0A2M4CV52   A0A2A4IUM2   A0A224XJI0   A0A232ENU1   A0A224XIB0   A0A0H3UA66   A0A2H8TKI9   A0A2S2P698   Q95SX7   A0A2M4CV42   A0A2S2P7B2   A0A2S2Q2R8   A0A1Y1MT28   A0A2S2QDN9   A0A3N5Z7I3   A0A087UGF5   A0A0J7MYU2   Q07995   J9LYS0   A0A2S2P3X8   A0A224X6R6   A0A2S2PBB4   A0A2S2PX53   Q9NBX4   J9KKL3   A0A2S2NCK2   A0A142LX49  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

744

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.28443999999999

Exp number, first 60 AAs:

0.05465

Total prob of N-in:

0.03455

outside

1  -  744

 

 

Pi

17.823535

Theta

18.050318

Tajima's D

0

CLR

0.000988

CSRT

0.373231338433078

Interpretation

Uncertain