Gene

KWMTBOMO03451  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006363

Annotation

PREDICTED:_axonemal_dynein_light_intermediate_polypeptide_1_[Amyelois_transitella]

Location

Bomo_Chr6(-):8190075-8192972      View in EpiBrowser

Full name

33 kDa inner dynein arm light chain, axonemal       + More
Axonemal dynein light intermediate polypeptide 1      

Alternative Name

p33
Inner dynein arm light chain, axonemal
hp28

Location in the cell

Nuclear   Reliability : 2.344

CDS

ATGGGAGAACGGGCACCGGTATCTGCAGAAGAGACGTTAGTCCGTTACGACAACCCAGTGTTGGTGACTAAAAGACAGGAAAAAGTTCCTTCCCCGAGAGCTGGCGCTTCAACACAACCGTGCGTACCCACCGAAGCAAAGAAAGAAACTGAAGAGATCTTAAATGCTATTTTACCCCCGAAAGAATGGGAGGAAGATGGACAAATATGGACACAAAAGATTTCTTCTACTCCGGCGACCCGTTTGGACGTGATAAACCTGCAAGAAATGCTCGATACTCGTCTGCAGCAGAGACAAGCCAGAGAAACCGGTATATGTCCAGTTCGAAGACAATTGTACACCCAATGTTTTGATGAACTTATCAGACAGGTAACGATAAACTGTGGGGAAAGAGGACTACTTCTGCTGAGGGTGCGGGATGAGGCACGAATCACTATGGAAGCTTACCAGACCTTATATTGCAGTTCTATCGCGTTCGGTATGAGAAAAGCTCTACAGTCGGAACAAGGGAAATCAGATCTCATGGACCAAGTGGCTAAGTTAGAAGCGGAACGGTCGACCTTGGAGAAGCAATGTATGGAGTTAAAGCAGAAAACGGAACAGTTGGAGAGACGGGCCGCGGAACTTAGGGCCGCTGAAGAGAAACGACATCAAGAGGAATTGTTAGCTTTGAAGAAAACTAACGCTCAGTTGAAAGCGCAACTGGAAGGAATTATAGCACCCAAGAAGTAA

Protein

MGERAPVSAEETLVRYDNPVLVTKRQEKVPSPRAGASTQPCVPTEAKKETEEILNAILPPKEWEEDGQIWTQKISSTPATRLDVINLQEMLDTRLQQRQARETGICPVRRQLYTQCFDELIRQVTINCGERGLLLLRVRDEARITMEAYQTLYCSSIAFGMRKALQSEQGKSDLMDQVAKLEAERSTLEKQCMELKQKTEQLERRAAELRAAEEKRHQEELLALKKTNAQLKAQLEGIIAPKK

Description

May play a dynamic role in flagellar motility.

Similarity

Belongs to the inner dynein arm light chain family.

Keywords

Coiled coil   Complete proteome   Direct protein sequencing   Dynein   Motor protein   Reference proteome   Cell projection   Alternative splicing   Polymorphism  

Feature

chain  33 kDa inner dynein arm light chain, axonemal
splice variant  In isoform 2.
sequence variant  In dbSNP:rs11749.

Uniprot

H9JA18   A0A2A4JPW0   A0A212EXA2   A0A2H1VCZ0   A0A194PWT8   A0A194RNM3   + More
D6X4F2   U4ULL9   N6TEZ3   A0A1Y1MLX2   A0A0L7RGI3   A0A2P8XZQ6   A0A026WR72   K7J199   Q16IA9   B0W926   A0A1Q3FTG0   E0W1W4   A0A088AN98   A0A084VTL0   A0A195BBM0   A0A195FKM8   A0A1B0EYJ4   A0A182J2E8   A0A0B7AHM1   A0A158NUB2   A0A182U8Y1   A0A151IXS5   A0A182SYK7   C3Y8E9   A0A182QZ37   A0A232FJH4   A0A182YG10   A0A154PAQ6   A0A182M4M9   A0A1W4XBM4   A0A182VM50   A0A182KMM3   A0A182XKI0   Q7Q255   A0A182I868   A0A182VWZ7   A0A0N0BBS8   A0A1S3K7C8   A0A2C9JTV2   A0A1J1HU13   A0A182NDX8   A0A2A3EBQ7   A0A182K5H2   A0A1I8QC68   A0A1L8E507   A0A1X7UXA5   W8BUF0   A0A094ZPG3   A0A0L0CC08   A0A1A9V719   B4K9Z5   V4B056   B3S206   B4JG12   B4LXZ0   A0A1A9X2R2   A0A034VEF2   A0A1B0FJ59   A0A1A9XW32   A0A1B0BDP5   A0A1A9ZL32   A0A0K8VCK9   A0A0A1XJQ3   A0A1I8MW63   A0A0M4F5T9   A7RQ98   A0A369RQB3   A0A1I8HJS7   F4WRA5   A0A336LNR0   Q295C3   B4GMB2   B4NK54   A0A3M6TP34   H2YD39   Q26630   A0A177AXU0   D1GZ37   B3MTU0   A0A3B0JRK7   A0A074ZC59   A0A2K6LTM0   H2Y1M1   A0A2K6P6Z1   A0A0D9S7R5   Q4R3K5   O14645   A0A3M7PQX4   B6RB89   A0A2G8JUG4   A0A2K6CJA0   A0A2K5Y481   A0A096MMX1   A0A2K5MQG7  

Pubmed

19121390    22118469    26354079    18362917    19820115    23537049    + More
28004739    29403074    24508170    20075255    17510324    20566863    24438588    21347285    18563158    28648823    25244985    20966253    12364791    14747013    17210077    15562597    24495485    22246508    26108605    17994087    23254933    18719581    25348373    25830018    25315136    17615350    30042472    26392545    21719571    15632085    30382153    8662724    18057021    12481130    15114417    25362486    9284741    14702039    17974005    16710414    15489334    27120127    16959974    30375419    29023486   

EMBL

BABH01009332    NWSH01000938    PCG73473.1    AGBW02011797    OWR46113.1    ODYU01001883    + More
SOQ38713.1    KQ459589    KPI97483.1    KQ459896    KPJ19438.1    KQ971410    EEZ97276.1    KB632375    ERL94022.1    APGK01030847    KB740787    ENN78939.1    GEZM01027567    JAV86674.1    KQ414596    KOC69970.1    PYGN01001112    PSN37487.1    KK107119    EZA58537.1    CH478091    EAT34000.1    DS231861    EDS39464.1    GFDL01004342    JAV30703.1    DS235873    EEB19558.1    ATLV01016361    KE525079    KFB41304.1    KQ976532    KYM81594.1    KQ981512    KYN40817.1    AJVK01060030    HACG01032545    CEK79410.1    ADTU01026372    KQ980795    KYN13023.1    GG666491    EEN63386.1    AXCN02002211    NNAY01000140    OXU30629.1    KQ434864    KZC08985.1    AXCM01002744    AAAB01008978    EAA13638.5    APCN01002659    KQ436008    KOX67614.1    CVRI01000021    CRK91491.1    KZ288292    PBC29165.1    GFDF01000271    JAV13813.1    GAMC01003723    JAC02833.1    KL250643    KGB34914.1    JRES01000630    KNC29791.1    CH933806    EDW15643.1    KB200027    ESP03353.1    DS985247    EDV23282.1    CH916369    EDV92551.1    CH940650    EDW66856.1    GAKP01018068    JAC40884.1    CCAG010022756    JXJN01012589    GDHF01016074    JAI36240.1    GBXI01003172    JAD11120.1    CP012526    ALC47312.1    DS469528    EDO46256.1    NOWV01000300    RDD36885.1    NIVC01001330    NIVC01001023    NIVC01000414    PAA69365.1    PAA73214.1    PAA83570.1    GL888284    EGI63322.1    UFQT01000034    SSX18303.1    CM000070    EAL28789.1    CH479185    EDW37986.1    CH964272    EDW85096.1    RCHS01003243    RMX43106.1    U47278    LWCA01000824    OAF66805.1    FN546776    CBE67075.1    FN546621    FN546622    FN546623    FN546624    FN546625    FN546626    FN546627    FN546628    FN546629    FN546630    FN546631    CH902623    CBE66920.1    CBE66921.1    CBE66922.1    CBE66923.1    CBE66924.1    CBE66925.1    CBE66926.1    CBE66927.1    CBE66928.1    CBE66929.1    CBE66930.1    EDV30221.1    OUUW01000008    SPP83643.1    KL597020    KV906719    KER20795.1    OON14323.1    EAAA01001535    AQIB01142718    AB179261    AF006386    AK295199    AK290502    BX647913    AL034379    BC039074    BC046117    REGN01009371    RNA01319.1    EF103436    ABO26694.1    MRZV01001244    PIK39401.1    AHZZ02015778   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000007266    + More
UP000030742    UP000019118    UP000053825    UP000245037    UP000053097    UP000002358    UP000008820    UP000002320    UP000009046    UP000005203    UP000030765    UP000078540    UP000078541    UP000092462    UP000075880    UP000005205    UP000075902    UP000078492    UP000075901    UP000001554    UP000075886    UP000215335    UP000076408    UP000076502    UP000075883    UP000192223    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840    UP000075920    UP000053105    UP000085678    UP000076420    UP000183832    UP000075884    UP000242457    UP000075881    UP000095300    UP000007879    UP000037069    UP000078200    UP000009192    UP000030746    UP000009022    UP000001070    UP000008792    UP000091820    UP000092444    UP000092443    UP000092460    UP000092445    UP000095301    UP000092553    UP000001593    UP000253843    UP000095280    UP000215902    UP000007755    UP000001819    UP000008744    UP000007798    UP000275408    UP000007875    UP000007110    UP000007801    UP000268350    UP000233180    UP000008144    UP000233200    UP000029965    UP000233100    UP000005640    UP000276133    UP000230750    UP000233120    UP000233140    UP000028761    UP000233060   

PRIDE

H9JA18    Q26630    O14645   

Pfam

PF10211   Ax_dynein_light        + More
PF06401   Alpha-2-MRAP_C
PF06400   Alpha-2-MRAP_N

Interpro

IPR019347   Axonemal_dynein_light_chain        + More
IPR036744   RAP_sf       
IPR037999   RAP_D3       
IPR010483   Alpha_2_MRAP_C       
IPR009066   MG_RAP_rcpt_1       

SUPFAM

SSF47045   SSF47045       

Gene 3D

1.20.81.10    

CDD

cd14808  RAP_D3

ProteinModelPortal

H9JA18   A0A2A4JPW0   A0A212EXA2   A0A2H1VCZ0   A0A194PWT8   A0A194RNM3   + More
D6X4F2   U4ULL9   N6TEZ3   A0A1Y1MLX2   A0A0L7RGI3   A0A2P8XZQ6   A0A026WR72   K7J199   Q16IA9   B0W926   A0A1Q3FTG0   E0W1W4   A0A088AN98   A0A084VTL0   A0A195BBM0   A0A195FKM8   A0A1B0EYJ4   A0A182J2E8   A0A0B7AHM1   A0A158NUB2   A0A182U8Y1   A0A151IXS5   A0A182SYK7   C3Y8E9   A0A182QZ37   A0A232FJH4   A0A182YG10   A0A154PAQ6   A0A182M4M9   A0A1W4XBM4   A0A182VM50   A0A182KMM3   A0A182XKI0   Q7Q255   A0A182I868   A0A182VWZ7   A0A0N0BBS8   A0A1S3K7C8   A0A2C9JTV2   A0A1J1HU13   A0A182NDX8   A0A2A3EBQ7   A0A182K5H2   A0A1I8QC68   A0A1L8E507   A0A1X7UXA5   W8BUF0   A0A094ZPG3   A0A0L0CC08   A0A1A9V719   B4K9Z5   V4B056   B3S206   B4JG12   B4LXZ0   A0A1A9X2R2   A0A034VEF2   A0A1B0FJ59   A0A1A9XW32   A0A1B0BDP5   A0A1A9ZL32   A0A0K8VCK9   A0A0A1XJQ3   A0A1I8MW63   A0A0M4F5T9   A7RQ98   A0A369RQB3   A0A1I8HJS7   F4WRA5   A0A336LNR0   Q295C3   B4GMB2   B4NK54   A0A3M6TP34   H2YD39   Q26630   A0A177AXU0   D1GZ37   B3MTU0   A0A3B0JRK7   A0A074ZC59   A0A2K6LTM0   H2Y1M1   A0A2K6P6Z1   A0A0D9S7R5   Q4R3K5   O14645   A0A3M7PQX4   B6RB89   A0A2G8JUG4   A0A2K6CJA0   A0A2K5Y481   A0A096MMX1   A0A2K5MQG7  

KEGG

101746305    K10410 dynein light intermediate chain, axonemal | (RefSeq) putative inner dynein arm light chain, a

GO

GO:0045504   GO:0005930   GO:0005737   GO:0036159   GO:0030175   GO:0008201   GO:0050750   GO:0005783   GO:0030286   GO:0003774   GO:0097729   GO:0005929   GO:0017111  

PANTHER

PTHR13183  

Subcellular location

  

Length:

243

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00343

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03693

outside

1  -  243

 

 

Pi

162.729855

Theta

139.770231

Tajima's D

0.447828

CLR

0

CSRT

0.493625318734063

Interpretation

Uncertain