SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03450  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006517
Annotation
PREDICTED:_protein_lap4_isoform_X11_[Bombyx_mori]
Location
Bomo_Chr6(+):8138373-8179199      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.615
 

Sequence

CDS
ATGGACGAGGTACAGAAAATCGAAGAGATCCCGGAAATAATTAAAGACGACGACAGCGACACTATAACTGCAGTGGATCGGGATTCCTCTGAAACTGAAAATGATGAAAACGAAGACTCGGACGAACTTGAGCGGGGCGAGAAGCGCGTGGTGTGGCGCAGCTCGGTGGAGGAGCGCGGTGCTGGGTGCGCGGGGGGCCGCCTTCACCGCCGCGACACGCCTCACCACCTCAAGAACAAACGCGTCAACATGATGGACGCGGGACGGGCGCGCGACCTCATAGCGCAGGCGATCAAGAAACAAGAACTAAACGATGAACGCAAACCCGACGAAGAAGCCACAGAAGACATTCCAGACGGCGAGTCTGTGTCGGAACGTGCAGAGAGCGAAGCTCGTTTAGTTGGCGAACAGCGATGCATCGAGGTGCGGATAAATCGCACAGCCGGCGGGCTCGGCCTTAGTATAGCGGGCGGACGCGGTTCCACTCCTTACATCGGTAATGATGAGGGAATATTCATATCAAGGGTCACGAATAACGGACCAGCCTATTTGGCCGGACTAAGAGTCGGAGACAAGGTGCTCTCGGTGAACGGTACATCTGTTGTAGACGTCGATCATTATTATGCGGTGGAAGTGCTTAAAGCGAGCGGTCCCACGCTCACACTGGTCGTGACCAGGGATTCGCCCAATTCAACCAGGACCCACAGTCGTGCCCCCAGTGGAGCTAGTCATCATTCTGTGTCCAGTACAACAGATACGGTTTCTACTTTGGAAAATGGACAGGTGCCAACAAATCGGAGCTTACAGACGAAATCGCTCATCATCGGCAACCAATATGCTCAGGAATACGAACAGGAGTTCAAGGAGCAAGTACTCAATCAGTCTACGCCGATCATCGCGACTCCCGTTGCGAGTCACAGCCCCTCGCCTCCCCAAATGAGAACTGAGACTTACCAACGATTGCAAGCATCGCCACCTCCTGCAACAACTCCTTATATACCCCCAGTTTACCAACAAAAGGTGCTAGTTCACACGACGTTGATCCGCGACGGCGCCGGCCTCGGGTTCAGCATCGCCGGCGGGAAGGGCTCGCCGCCGTACCGCGAGGACAGCGACGCCATATACATCTCGAGGATATCCCCGCAGGGCGCCGCCGCTAAGGACGGGAAGATGCAAGTCGGCGACAAAGTTGTTTCGATCAACGGTGTCGATATGGAGAAGGCGGCTCACGAAACGGCCGTTTCGCTTCTTACGGGACACGAGAGGTTTGTCAGGCTCGTCCTCCAGCGTACCATCACTACCGAACAAGGCGACCAGCCCCAACGCAAGTCGACAACAGATGAAGTGAGAGACCACAAGACGAGTCTACAGAATTTGAATACCACGCCCACACCGAAACTCACGAACGATCACGTCGCACCCCTCACACAGTCCGCCCCGCGCCCCGCACCGCAACCCCTCGTACAGCCGCACGCGCCCGCACACACGCCCGCACACGCGCCCGCACAGCCGCAGACCGCCACCCCGCTCGTGTACGCCCAAGCACCGACGCACGCCCAGCGATTATCTTACGCACCCTCCAACACCCTTCCACCTCAGCCGGCACCGAGAAAATTGAGTCAAACAAACGGACAGGCGCCTACCACGAAACCCAGCACTAACAGTACGAACGCCCCCCTCACCGCCGGCGCCCCGCAGGCTTCCACCGACGACGTATTCGAAGACATACAGCCATCGCGACCGATAACGAACGAGGAGTTCCAAGCGATGATTCCCGCTCACTTCCTGGGCGGGCCCCGCGCCCGGCCTGCTCACGAGGGTCCGCCCGAGCGCGGCGTCCGCGTCACGGTAGAGCGCGCACCCACCGGCGTGGTGCTGCCTCCGCCGCCGGACGCGCTCGGCCGCGTCACGGAGACCATCACCAAGTCGACCTTCACCGAGACCACCGTCACACGGGTCACGGACAACCACTTCGTTGCGCCCCTCATCATAGAAGATGTCACTCTCTTGAAGGAAGGCGGATCCCTTGGTTTCAGTATCATCGGCGGCACCGATCATTCGTGTGTACCGTTCGGAGGAAAGGAACCAGGGATTTTTATCTCACACGTCGTGCCGGGAGGAGTCGCGGCGCGCTCAGGCAAGCTCCGCATGGGTGATCGTTTGCTGAAAGTGAACGGAAACGACTTGGCCGGAGTCACGCACCGCGACGCTGTACAGCTTCTGCTGCAGCCCGGCGCCACGCTGTCGCTCACCGTTCGTCACGACCCACTACCTATCGGATACCAGGAATTAACGATCATAAAACAAGAAGGCGAGAAACTCGGTATGCATATCAAGGGTGGCCTTAAAGGACAGCGTGGCAACCCTAACGATCCCAACGATGAGGGAGTTTTCATATCAAAAGTCAACAGCGGCGGAGCGGCCAGAAGGGATGGCAGGCTCAAGGTCGGCATGCGTCTGTTAGAAGTCAACGGTATTTCGCTACTGGGAGCGACCCACGCGGAGGCTGTCAACGCGCTGCGTTCGGCCACGCTCGCGCCGCTCCATCTGGTTGTCTGCCAAGGATACACCAGACCGGAGAAGTATACGACCGGTAGCGAAAGCGGGACGACTGAAACCGGCGGCTCTCTGTCTCACTCAACGTCAAGCCTGGATAGGGACGAACCGTTGCACAGCCAACAACCGGAGCAGCATTATCAACAGGATCTAGTTGAGTTTGAACACGAGAAGCAAGTCGCCGAAATGGGAGGGAAATCTACACCCGAAAAGGTGTTAGATATAGTTCACGCCGTCGAGAGTATGGCGATGGAGCCCGCTCCGTCTCACTCGCCGGAGCCGCAGCACAAGACGACCACGGTGGTCATGTCCAAACACACCCTCCAACCTCAGAATTCTAATCCAGAGGAAAAGGAAGGAAACATTTAG
Protein
MDEVQKIEEIPEIIKDDDSDTITAVDRDSSETENDENEDSDELERGEKRVVWRSSVEERGAGCAGGRLHRRDTPHHLKNKRVNMMDAGRARDLIAQAIKKQELNDERKPDEEATEDIPDGESVSERAESEARLVGEQRCIEVRINRTAGGLGLSIAGGRGSTPYIGNDEGIFISRVTNNGPAYLAGLRVGDKVLSVNGTSVVDVDHYYAVEVLKASGPTLTLVVTRDSPNSTRTHSRAPSGASHHSVSSTTDTVSTLENGQVPTNRSLQTKSLIIGNQYAQEYEQEFKEQVLNQSTPIIATPVASHSPSPPQMRTETYQRLQASPPPATTPYIPPVYQQKVLVHTTLIRDGAGLGFSIAGGKGSPPYREDSDAIYISRISPQGAAAKDGKMQVGDKVVSINGVDMEKAAHETAVSLLTGHERFVRLVLQRTITTEQGDQPQRKSTTDEVRDHKTSLQNLNTTPTPKLTNDHVAPLTQSAPRPAPQPLVQPHAPAHTPAHAPAQPQTATPLVYAQAPTHAQRLSYAPSNTLPPQPAPRKLSQTNGQAPTTKPSTNSTNAPLTAGAPQASTDDVFEDIQPSRPITNEEFQAMIPAHFLGGPRARPAHEGPPERGVRVTVERAPTGVVLPPPPDALGRVTETITKSTFTETTVTRVTDNHFVAPLIIEDVTLLKEGGSLGFSIIGGTDHSCVPFGGKEPGIFISHVVPGGVAARSGKLRMGDRLLKVNGNDLAGVTHRDAVQLLLQPGATLSLTVRHDPLPIGYQELTIIKQEGEKLGMHIKGGLKGQRGNPNDPNDEGVFISKVNSGGAARRDGRLKVGMRLLEVNGISLLGATHAEAVNALRSATLAPLHLVVCQGYTRPEKYTTGSESGTTETGGSLSHSTSSLDRDEPLHSQQPEQHYQQDLVEFEHEKQVAEMGGKSTPEKVLDIVHAVESMAMEPAPSHSPEPQHKTTTVVMSKHTLQPQNSNPEEKEGNI

Summary

Uniprot
H9JAH2   A0A2A4JNC7   A0A2A4JN33   A0A2A4JP19   A0A2A4JN43   A0A2A4JN06   + More
A0A2A4JNU0   A0A2A4JNV8   A0A2A4JPX6   A0A2A4JPY7   A0A2A4JPY9   A0A2A4JNA7   A0A2H1VE74   A0A212EXF1   A0A194RPK0   A0A224XI89   A0A0V0G5C8   A0A069DXR8   A0A1W4XDC2   A0A1W4XNP0   A0A1W4XD00   A0A1W4XNN6   A0A1W4XMJ7  
Pubmed
19121390    22118469    26354079    26334808   
EMBL
BABH01009329    BABH01009330    BABH01009331    BABH01009332    NWSH01000938    PCG73471.1    + More
PCG73457.1    PCG73458.1    PCG73467.1    PCG73455.1    PCG73469.1    PCG73456.1    PCG73460.1    PCG73472.1    PCG73470.1    PCG73461.1    ODYU01001883    SOQ38712.1    AGBW02011797    OWR46114.1    KQ459896    KPJ19437.1    GFTR01008573    JAW07853.1    GECL01002867    JAP03257.1    GBGD01000066    JAC88823.1   
Proteomes
UP000005204    UP000218220    UP000007151    UP000053240    UP000192223   
PRIDE
H9JAH2   
Pfam
PF00595   PDZ        + More
PF13855   LRR_8
Interpro
IPR036034   PDZ_sf        + More
IPR001478   PDZ       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
SUPFAM
SSF50156   SSF50156       
Gene 3D
3.80.10.10    
ProteinModelPortal
H9JAH2   A0A2A4JNC7   A0A2A4JN33   A0A2A4JP19   A0A2A4JN43   A0A2A4JN06   + More
A0A2A4JNU0   A0A2A4JNV8   A0A2A4JPX6   A0A2A4JPY7   A0A2A4JPY9   A0A2A4JNA7   A0A2H1VE74   A0A212EXF1   A0A194RPK0   A0A224XI89   A0A0V0G5C8   A0A069DXR8   A0A1W4XDC2   A0A1W4XNP0   A0A1W4XD00   A0A1W4XNN6   A0A1W4XMJ7  
PDB
4WYU     E-value=1.76696e-52,     Score=524

Ontologies

KEGG
101745685    K16175 protein scribble | (RefSeq) protein lap4
PATHWAY
04391    Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)
GO
GO:0005515   GO:0006561   GO:0006520   GO:0016491   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Topology

Length:
974
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00489
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00018
outside
1  -  974
 
 

Population Genetic Test Statistics

Pi
201.020808
Theta
165.506348
Tajima's D
0.581456
CLR
0.588528
CSRT
0.536973151342433
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 QQIDQEITVFHDSIQTIQMAK 100.00 0.001
26822097 GNPNDPNDEGVFISK 100.00 0.002
28467696 GSTGTIGNFAK 100.00 0.002
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