Gene

KWMTBOMO03449

Pre Gene Modal

BGIBMGA006516

Annotation

PREDICTED:_protein_lap4_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr6(+):8107513-8138011      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.291

CDS

ATGTTTCGATGTATACCTTTGTTCAAATGTAATCGCCAAGTGGAAAGTGTAGACAAGCGGCACTGTTCGTTGCCAACAGTACCTGAAGACATTTTGCGGTATTCTAGGAGCTTGGAAGAACTATTACTGGATGCTAATCATATAAGAGATTTACCTAAGAATTTCTTCAGATTACATCGATTAAGGCGACTTGGTCTCAGTGATAATGAGATACACAAACTGCCAGCTGATATCCAGAATTTTGAAAATTTAGTAGAATTGGATGTATCACGCAATGACATTCCGGATATACCTGAGGACATCAAGAAGCTGCGTGCCCTCCAGATCGCGGACTTCAGCAGCAATCCTATACCAAGGCTGCCGGCCGGCTTCAGTCAACTTCGGGCCCTTACGGTCCTCGGCCTCAATGATATGTCTCTTACTAGTTTACCCAACGATTTCGGCAGTTTAGTGTCACTTCAATCTTTGGAATTGCGAGAAAACCTACTTAAGTCACTGCCAGAGTCCTTGAAGAATTTGACCAATCTCCAGAGACTAGATTTAGGTGATAATGAAATTGAGGAATTGCCAGGGTTTATTGGAGAGCTTCCTGCTTTAGAAGAACTTTGGTTGGACCATAACAAGTTGCAGTATTTGCCGCCTGAGATCGGCAATCTCAAAGCGCTGATCTGCTTAGATGTTAGTGAGAACAAATTAGAGAAGATACCAGAAGAAATTGGCGGACTTTCATCATTAACCGACTTGCACCTCTCCCAAAACATGTTAGAATCCATACCTGATGGTATAGGTCATTTATACAAGTTAACTATACTGAAGTTGGACCAAAATAGATTACATACATTAAACGAAAACGTTGGAAGGTGTACAAATCTACAAGAGCTTATATTAACGGAGAATTTTTTAACGGAATTGCCTGACTCTATTGGAAATCTCAACAAGTTGACCGTTTTGAATGTAGATAGAAATTCGTTAGCCGAAATTCCGATGGATATCGGTAATATGACGCTGTTAGGGGTCCTGAGTTTAAGAGATAATAAATTGACGAAACTGCCGAACGAATTAGGGAACTGTACGTCACTTCACGTTTTGGACGTAAGCGGAAATCGGTTGCAATACCTTCCGTACACGCTGGTAAATTTGGAACTAAAAGCGGTGTGGTTGTCCGAAAACCAAGCGCAACCACTCTTGACTTTCCAAACGGACAGAGACGAAAGCACCGGGGAGAACGTCCTTACTTGTTTCCTCTTACCGCAGCTCAGTTACACTCAACAACCAGATACGAGCGTTTCCCGCGATCGTGATTCGGACAACGAAGATTGGGAGGAGAAGGAGGCGTCGCGCACTCATTCCGTTAAGTTCACGGAAGACGTTTCGGACGTTCGAGAGACACCGTTCGTAAGACAGAACACGCCTCATCCGAAAGACTTGAAAGCGAAAGCTCACAAGCTTTTGGCTGGACGATCACCGGACAATGCGATCACGCAACCAGCGAAGACCGAATCGCCCACTACGAACGGATTACCTTTGTCCCCTATAAAAATTGTTCCAGTCGTAGAAGAGAAAGTAGAGGTGAGTTTATTTAAAACAAGCGGCCCGCTCCGGCTCCGCTCGGGTCTTTAA

Protein

MFRCIPLFKCNRQVESVDKRHCSLPTVPEDILRYSRSLEELLLDANHIRDLPKNFFRLHRLRRLGLSDNEIHKLPADIQNFENLVELDVSRNDIPDIPEDIKKLRALQIADFSSNPIPRLPAGFSQLRALTVLGLNDMSLTSLPNDFGSLVSLQSLELRENLLKSLPESLKNLTNLQRLDLGDNEIEELPGFIGELPALEELWLDHNKLQYLPPEIGNLKALICLDVSENKLEKIPEEIGGLSSLTDLHLSQNMLESIPDGIGHLYKLTILKLDQNRLHTLNENVGRCTNLQELILTENFLTELPDSIGNLNKLTVLNVDRNSLAEIPMDIGNMTLLGVLSLRDNKLTKLPNELGNCTSLHVLDVSGNRLQYLPYTLVNLELKAVWLSENQAQPLLTFQTDRDESTGENVLTCFLLPQLSYTQQPDTSVSRDRDSDNEDWEEKEASRTHSVKFTEDVSDVRETPFVRQNTPHPKDLKAKAHKLLAGRSPDNAITQPAKTESPTTNGLPLSPIKIVPVVEEKVEVSLFKTSGPLRLRSGL

Uniprot

A0A2A4JNV8   A0A2A4JPU3   A0A2A4JN06   A0A2A4JN43   A0A2A4JNU0   A0A2A4JN16   + More
A0A2A4JPY7   A0A2A4JP37   A0A2A4JPX6   A0A2A4JN33   A0A2A4JNC7   A0A194RTJ1   A0A194Q253   A0A1L8DIR0   A0A1Q3EUR3   A0A069DXR8   A0A151WRI2   A0A151IG73   A0A195BAM7   A0A0V0G5C8   A0A195FKD1   F4WRA6   E2BMS1   A0A0K8TGI4   A0A0K8TGU1   A0A0K8TAR0   A0A0K8TGI0   A0A0A9XBF3   A0A0A9XAE9   A0A0A9XCS6   A0A0A9XK01   A0A0K8TG82   A0A0K8TBV1   A0A0A9XBE8   A0A0K8TAS1   A0A0A9Z136   A0A0K8THH0   A0A0A9XIP3   A0A0K8TB62   A0A0K8TG76   A0A0K8TAU0   A0A0A9X8C7   A0A158NUU3   E2AD26   A0A336M751   A0A146L5J4   A0A146L9V0   A0A336LYR4   A0A336KKD6   V9IC56   A0A154PAZ8   A0A088ANG2   A0A1B6KH23   A0A1B6KKP4   A0A1B6LUV6   A0A1B6KAM2   A0A1B6H6Z5   A0A034VDB5   A0A0A1XP83   W8C7R8   A0A0K8VK50   A0A1B6LTJ2   A0A1B6MQT7   A0A1B6LBT3   A0A1B6MHB9   A0A0K8U4C6   V5GMN3   A0A1Y1LNA5   A0A1B6IV05   A0A1Y1LS62   A0A026WS96   A0A1Y1LNA2   A0A1Y1LN58   A0A2M3YXI9   A0A3L8DFK9   A0A0K8V903   A0A1Y1LNA7   A0A0Q9X030   A0A2M3YXK4   A0A2M4CKD5   A0A1Y1LN88   A0A0K8UD34   T1PJ26   A0A0M3QXL6   K7J1A0   A0A1J1HWG7   B4JGP0   A0A2M3YYE9   A0A336LXZ6   A0A336LUY7   A0A336KF30   A0A1J1HWT6   A0A0P8Y0R0   A0A0P8Y0S7   A0A1B6DBB0   E1JIZ0   E1JIZ1   A0A0P9A0Z3   A0A1W4V7Z8   E1JIZ2  

Pubmed

26354079    26334808    21719571    20798317    25401762    21347285    + More
26823975    25348373    25830018    24495485    28004739    24508170    30249741    17994087    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867   

EMBL

NWSH01000938    PCG73456.1    PCG73463.1    PCG73455.1    PCG73467.1    PCG73469.1    + More
PCG73465.1    PCG73472.1    PCG73468.1    PCG73460.1    PCG73457.1    PCG73471.1    KQ459896    KPJ19436.1    KQ459589    KPI97485.1    GFDF01007752    JAV06332.1    GFDL01016013    JAV19032.1    GBGD01000066    JAC88823.1    KQ982806    KYQ50460.1    KQ977739    KYN00224.1    KQ976532    KYM81593.1    GECL01002867    JAP03257.1    KQ981512    KYN40816.1    GL888284    EGI63323.1    GL449319    EFN83009.1    GBRD01001222    JAG64599.1    GBRD01001225    JAG64596.1    GBRD01003179    JAG62642.1    GBRD01001227    JAG64594.1    GBHO01026623    JAG16981.1    GBHO01026625    JAG16979.1    GBHO01026158    JAG17446.1    GBHO01026159    JAG17445.1    GBRD01001223    JAG64598.1    GBRD01003181    JAG62640.1    GBHO01026628    JAG16976.1    GBRD01003178    JAG62643.1    GBHO01008079    JAG35525.1    GBRD01001226    JAG64595.1    GBHO01026629    JAG16975.1    GBRD01003180    JAG62641.1    GBRD01001224    JAG64597.1    GBRD01003182    JAG62639.1    GBHO01026627    JAG16977.1    ADTU01026648    ADTU01026649    ADTU01026650    GL438658    EFN68662.1    UFQS01000217    UFQT01000217    SSX01478.1    SSX21858.1    GDHC01015724    JAQ02905.1    GDHC01014264    JAQ04365.1    SSX01479.1    SSX21859.1    SSX01480.1    SSX21860.1    JR038395    AEY58237.1    KQ434864    KZC08987.1    GEBQ01029209    JAT10768.1    GEBQ01027949    JAT12028.1    GEBQ01012515    JAT27462.1    GEBQ01031474    JAT08503.1    GECU01037313    JAS70393.1    GAKP01018448    JAC40504.1    GBXI01001934    JAD12358.1    GAMC01007866    JAB98689.1    GDHF01013065    JAI39249.1    GEBQ01013038    JAT26939.1    GEBQ01001708    JAT38269.1    GEBQ01018841    JAT21136.1    GEBQ01004664    JAT35313.1    GDHF01030755    JAI21559.1    GALX01003107    JAB65359.1    GEZM01051169    JAV75103.1    GECU01016948    JAS90758.1    GEZM01051163    JAV75110.1    KK107119    EZA58536.1    GEZM01051167    GEZM01051162    JAV75112.1    GEZM01051168    JAV75104.1    GGFM01000228    MBW20979.1    QOIP01000009    RLU18689.1    GDHF01016957    JAI35357.1    GEZM01051164    JAV75109.1    CH933806    KRG01484.1    GGFM01000205    MBW20956.1    GGFL01001541    MBW65719.1    GEZM01051170    JAV75102.1    GDHF01027836    JAI24478.1    KA648684    AFP63313.1    CP012526    ALC46143.1    CVRI01000028    CRK92447.1    CH916369    EDV92644.1    GGFM01000548    MBW21299.1    SSX01481.1    SSX21861.1    SSX01482.1    SSX21862.1    SSX01483.1    SSX21863.1    CRK92451.1    CH902617    KPU80360.1    KPU80378.1    GEDC01014319    JAS22979.1    AE014297    ACZ95040.1    ACZ95039.1    KPU80374.1    ACZ95041.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000075809    UP000078542    UP000078540    + More
UP000078541    UP000007755    UP000008237    UP000005205    UP000000311    UP000076502    UP000005203    UP000053097    UP000279307    UP000009192    UP000092553    UP000002358    UP000183832    UP000001070    UP000007801    UP000000803    UP000192221   

PRIDE

E1JIZ0    E1JIZ1   

Pfam

PF13855   LRR_8        + More
PF00595   PDZ
PF12799   LRR_4

Interpro

IPR001478   PDZ        + More
IPR036034   PDZ_sf       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF50156   SSF50156       

Gene 3D

3.80.10.10    

ProteinModelPortal

A0A2A4JNV8   A0A2A4JPU3   A0A2A4JN06   A0A2A4JN43   A0A2A4JNU0   A0A2A4JN16   + More
A0A2A4JPY7   A0A2A4JP37   A0A2A4JPX6   A0A2A4JN33   A0A2A4JNC7   A0A194RTJ1   A0A194Q253   A0A1L8DIR0   A0A1Q3EUR3   A0A069DXR8   A0A151WRI2   A0A151IG73   A0A195BAM7   A0A0V0G5C8   A0A195FKD1   F4WRA6   E2BMS1   A0A0K8TGI4   A0A0K8TGU1   A0A0K8TAR0   A0A0K8TGI0   A0A0A9XBF3   A0A0A9XAE9   A0A0A9XCS6   A0A0A9XK01   A0A0K8TG82   A0A0K8TBV1   A0A0A9XBE8   A0A0K8TAS1   A0A0A9Z136   A0A0K8THH0   A0A0A9XIP3   A0A0K8TB62   A0A0K8TG76   A0A0K8TAU0   A0A0A9X8C7   A0A158NUU3   E2AD26   A0A336M751   A0A146L5J4   A0A146L9V0   A0A336LYR4   A0A336KKD6   V9IC56   A0A154PAZ8   A0A088ANG2   A0A1B6KH23   A0A1B6KKP4   A0A1B6LUV6   A0A1B6KAM2   A0A1B6H6Z5   A0A034VDB5   A0A0A1XP83   W8C7R8   A0A0K8VK50   A0A1B6LTJ2   A0A1B6MQT7   A0A1B6LBT3   A0A1B6MHB9   A0A0K8U4C6   V5GMN3   A0A1Y1LNA5   A0A1B6IV05   A0A1Y1LS62   A0A026WS96   A0A1Y1LNA2   A0A1Y1LN58   A0A2M3YXI9   A0A3L8DFK9   A0A0K8V903   A0A1Y1LNA7   A0A0Q9X030   A0A2M3YXK4   A0A2M4CKD5   A0A1Y1LN88   A0A0K8UD34   T1PJ26   A0A0M3QXL6   K7J1A0   A0A1J1HWG7   B4JGP0   A0A2M3YYE9   A0A336LXZ6   A0A336LUY7   A0A336KF30   A0A1J1HWT6   A0A0P8Y0R0   A0A0P8Y0S7   A0A1B6DBB0   E1JIZ0   E1JIZ1   A0A0P9A0Z3   A0A1W4V7Z8   E1JIZ2  

PDB

4U08     E-value=2.94347e-41,     Score=425

KEGG

101745685    K16175 protein scribble | (RefSeq) protein lap4

GO

GO:0005515   GO:0006561   GO:0006520   GO:0016491   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

539

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00084

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00069

outside

1  -  539

 

 

Pi

210.645766

Theta

188.409209

Tajima's D

0.445698

CLR

0.111059

CSRT

0.504074796260187

Interpretation

Uncertain