SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03445  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006513
Annotation
PREDICTED:_uncharacterized_protein_LOC106137666_[Amyelois_transitella]
Location in the cell
Extracellular   Reliability : 1.257 Nuclear   Reliability : 1.667
 

Sequence

CDS
ATGTCGAACATTCCACCGAATGGTCCCCCGCCTCCGCCGCCCTATGGTTATCCACCCCATCCTGGAGGATTCGCGTATATACCCATGCCGGCCCCAGTGATGATGCCGATGTACCCGCCGCCTGCACCTGATCCAACACCGAACCCCACTTACGTCACTAATTATTATTATCCCCATGCGCCTCCACCGCCACCTGCTACGACTACGCCGGACCCAGTCAGAGTTGTCGAAGATTCAAACCCAATTGAATGGGTTCAGTCATCGCCCAACACTGCTTCAACACTCACACATAGAGCATTCGTGGCTGGTAGAGAAGGCTGGGATGGCAGCCCTCTCTGGGTGATCAGATCGCATCATAGCGGAGAACTGATCCCCGGGAAACTAGCCATCAAACACCGATCGGCTTATATACCTCACGCGGGAAAAGAAATCCCTGTCCATAACTTTGAGGTTCTCTGTGCTCCTGGAAACGTCCTACGTTGGGTACCAGCATCCAACGGTCAAGTTCCTGTAGGTGCGATTCCAGCTGGCAACTCTCATAGCGGAGAACCCTTGTATATTGCCAGGGTCAACCACCTGAAATCTGTTACACCTGGGAAGGTTCATCCCAGTCACGGATGTTGCTATATCTCCTTTGGAGGCGAAGAAATCCCCATGAAGAATTACGAAGTGCTCTGTAAAATTGTGTGA
Protein
MSNIPPNGPPPPPPYGYPPHPGGFAYIPMPAPVMMPMYPPPAPDPTPNPTYVTNYYYPHAPPPPPATTTPDPVRVVEDSNPIEWVQSSPNTASTLTHRAFVAGREGWDGSPLWVIRSHHSGELIPGKLAIKHRSAYIPHAGKEIPVHNFEVLCAPGNVLRWVPASNGQVPVGAIPAGNSHSGEPLYIARVNHLKSVTPGKVHPSHGCCYISFGGEEIPMKNYEVLCKIV

Summary

Uniprot
ProteinModelPortal
PDB
5MH1     E-value=3.16505e-16,     Score=205

Ontologies

GO

Topology

Length:
229
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01055
Exp number, first 60 AAs:
0.01055
Total prob of N-in:
0.01084
outside
1  -  229
 
 

Population Genetic Test Statistics

Pi
131.805907
Theta
140.036119
Tajima's D
-0.505769
CLR
127.28546
CSRT
0.23618819059047
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 7e-14
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 7e-14
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 7e-14
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 7e-14
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 7e-14
28556443 VVEDSNPIEWVQSSPNTASTLTHR 100.00 7e-14
28556443 VVEDSNPIEWVQSSPNTASTLTHR 100.00 7e-14
28556443 VVEDSNPIEWVQSSPNTASTLTHR 100.00 3e-10
28556443 VVEDSNPIEWVQSSPNTASTLTHR 100.00 3e-10
28556443 VHPSHGCCYISFGGEEIPMK 100.00 3e-10
28556443 VHPSHGCCYISFGGEEIPMK 100.00 3e-10
28556443 EIPVHNFEVLCAPGNVLR 100.00 1e-08
28556443 EIPVHNFEVLCAPGNVLR 100.00 1e-08
28556443 EGWDGSPLWVIR 100.00 2e-06
28556443 VMAAALSLTAGR 100.00 2e-06
28556443 EGWDGSPLWVIR 100.00 0.012
28556443 EGWDGSPLWVIR 100.00 0.012
28556443 WVPASNGQVPVGAIPAGNSHSGEPLYIAR 100.00 0.012
28556443 EGWDGSPLWVIR 100.00 0.012
28556443 AWHMGDMIPGK 100.00 0.012
28556443 AWHMGDMIPGK 100.00 0.012
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