Gene

KWMTBOMO03441

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(-):7997665-8000223      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.007 Nuclear   Reliability : 1.565 PlasmaMembrane   Reliability : 1.098

CDS

ATGTGTGTGTGTCAAATACATGGCAATGTCGCGCCGATCGTTATCGCGTCTGTTTATCTTCCACCGGATAAGATCGTTTTAAGCAGTGATATCGAGGCGCTGCTCAGCATGGGAAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCTCACACCACAACCCCTAATGGCCGGCGGCTCGACGCGTTAGTCGATGATCTCACCTTCGATATCATCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAATGTAGCTCTGCGCTTACACTCGATTGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGTTGGGCATCAGTCTGGCTGAATCTAATCCACCATCGCTCCCGTTTAACCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCAACTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGCACTCGCGCCCTCTCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCAGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCTTCAGGCCAACTTGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAATCCAGTGCACGCCCAGCATTCAATCCGCGGACCCTGTTCATGTAGCATTAGTAGACAGTGAGGTAGAACGTAGAGCCTCCTTACCCTCGCACGCGTTACCATCCATCACCCCAATGGAAGTTAAAGACCTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATATATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACACAAACCCGGTAAACCAAAAAATAATCCGACGAGCTACCGCCCAATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATACTCATTGATGAACAATTCGGATTCCGTGCAAATCACTCATGGAGCCTCACGGAGCACATTCTTGTAGGGCTTAACCGACCAAAACCAATCTACACGGGAGCCCTCTTCTTCGACGTAGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGACAGTCTCGTGCTCATCATACGGGACTTCTTGTCAAACCGCTCTTTTCGATATCGAGTAGAGGGAACCCGCTCCTCCCCGCGTCCACTCACGGCTGGAGTCCCGCAAGGCTCTGTTCACTCTCCGCTCCTATTTAGTTTATTTACTAACGATATTCCCCGGTCGCCGCCGACCCAGCTAGCCTTATTTGCTGACGACACAACAGTTTACTACTCAAGTAGAAATAAGTTCCTAATTGCGAGTAAGCTCCAAAGCGCAGCGTTGACCCTTGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGCACAGCAGTGTTATTTCAAAGGGGAAACTCACCGCTTATTTCCTCCCGCATTAGGAGGAGAAATATCACACCCCCGATCACCCTCTTCGGCCAACCTATACCCTGGGCCAGGAAGGTCAAGTACCTGGGAGTCACCCTGGATGCATCCATGACATTCCGCCCGCATATAAAAACAGTCCGCGATCATGCCGCATTTATTCTCGGCAGACTCTATCCCATGATCTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGATTTACGCGAGTGTGGTGTTCGCTCACGTGGCCCGCACACACATAGACACCCTCCAATCCCTACAATCCCGCTTTTGA

Protein

MCVCQIHGNVAPIVIASVYLPPDKIVLSSDIEALLSMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLTFDIIAPLTPTHYPLNIAHRPDILDIALLKNVALRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESNPPSLPFNPDSTPSPQDTAEAIDILTSHINSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEALAPSQRSYYRLARTLKSDTVVTMPPLVGPSGQLAAFDDDEKAELLADTLQIQCTPSIQSADPVHVALVDSEVERRASLPSHALPSITPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLAYIFNAAMANCIFPAVWKEADVIGIHKPGKPKNNPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRANHSWSLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVHSPLLFSLFTNDIPRSPPTQLALFADDTTVYYSSRNKFLIASKLQSAALTLGQWFRKWRIDINPAKSTAVLFQRGNSPLISSRIRRRNITPPITLFGQPIPWARKVKYLGVTLDASMTFRPHIKTVRDHAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMIYASVVFAHVARTHIDTLQSLQSRF

Uniprot

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   A0A139WA11   V5GNJ2   J9LC21   A0A023EYS8   V5GNF3   K7IN67   J9JS95   X1WZH0   X1WLB2   X1WNI2   A0A224XF24   J9LFC9   A0A023EZE6   A0A2S2PPK8   A0A2S2QEE0   J9KPF1   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   Q07995   A0A2J7PU96   A0A2J7R7D0   A0A3N5Z7I3   A0A2J7PQB5   A0A2J7Q6J2   A0A224XB44   A0A0J7MYU2   A0A2M4BD83   A0A1Y1LKN6   A0A2S2PR14   A0A224X6Q4   A0A2S2NJB5   J9KKL3   A0A087UCW3   J9M522   A0A2M4CV52   A0A2S2N814   A0A224XI99   A0A2M4CV42   A0A2S2NH02   A0A224X6S1   A0A087UGF5   Q8T9X4   A0A0A9YU04   A0A069DZL8   A0A0A9YJ00   J9KLB1   X1WQI9   A0A0V0G5B6   Q8I7P8   A0A023EW17   A0A224X6T4   A0A2M4BD67   A0A2M4BDV6   A0A2M4CVK2   A0A2M4BD66   A0A2M4CVF1   A0A2M4BD62   A0A2S2N6Q7   A0A2M4BDA5   A0A2S2NGV8   A0A2M4BEF4   A0A2J7RE85   A0A224X746   A0A2M4BEZ9   A0A2J7QB68   A0A2S2Q383   A0A224X6U5   A0A1Q3G5F7   A0A023F069   A0A1Y1KFR3   A0A1Q3G5J4   A0A2J7PVX3   A0A2A4IUM2   A0A2S2RAN7   A0A224XJI0   A0A2J7R6U1   A0A2J7Q0Q6   X1WXE6   A0A2J7QFL0   A0A2J7R2E1   A0A2J7RKP3   A0A224X6W2   A0A2J7PP17   V9GZF1   A0A232ENU1   A0A2S2PA10   A0A2J7PDM0  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    20075255    8387152    30086797    25401762    26334808    24945155    1327974    28648823   

EMBL

AB018558    BAA76304.1    AB055391    BAB21761.1    U07847    AAA17752.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GALX01005299    JAB63167.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GBBI01004395    JAC14317.1    GALX01005359    JAB63107.1    ABLF02028535    ABLF02028545    ABLF02034467    ABLF02042518    ABLF02057746    ABLF02008153    ABLF02008462    ABLF02008464    GFTR01008038    JAW08388.1    ABLF02023911    GBBI01004571    JAC14141.1    GGMR01018716    MBY31335.1    GGMS01006359    MBY75562.1    ABLF02041767    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    S59870    AAB26437.2    NEVH01021205    PNF19912.1    NEVH01006736    PNF36716.1    RPOV01000134    RPJ78669.1    NEVH01022639    PNF18527.1    NEVH01017470    PNF24199.1    GFTR01008262    JAW08164.1    LBMM01013518    KMQ85605.1    GGFJ01001822    MBW50963.1    GEZM01053022    JAV74219.1    GGMR01019198    MBY31817.1    GFTR01008279    JAW08147.1    GGMR01004661    MBY17280.1    ABLF02029306    ABLF02029314    ABLF02060138    KK119261    KFM75202.1    ABLF02024246    GGFL01004957    MBW69135.1    GGMR01000676    MBY13295.1    GFTR01008256    JAW08170.1    GGFL01005012    MBW69190.1    GGMR01003864    MBY16483.1    GFTR01008271    JAW08155.1    KK119692    KFM76444.1    AF456125    AAL57609.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBGD01000415    JAC88474.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    ABLF02040174    ABLF02040183    ABLF02055266    ABLF02022418    GECL01003538    JAP02586.1    AY180919    AAN87272.1    GAPW01000276    JAC13322.1    GFTR01008261    JAW08165.1    GGFJ01001858    MBW50999.1    GGFJ01001857    MBW50998.1    GGFL01005121    MBW69299.1    GGFJ01001844    MBW50985.1    GGFL01005122    MBW69300.1    GGFJ01001843    MBW50984.1    GGMR01000226    MBY12845.1    GGFJ01001842    MBW50983.1    GGMR01003407    MBY16026.1    GGFJ01002256    MBW51397.1    NEVH01005277    PNF39135.1    GFTR01008151    JAW08275.1    GGFJ01002257    MBW51398.1    NEVH01016302    PNF25823.1    GGMS01002992    MBY72195.1    GFTR01008251    JAW08175.1    GFDL01000004    JAV35041.1    GBBI01003810    JAC14902.1    GEZM01084969    JAV60363.1    GFDL01000006    JAV35039.1    NEVH01020940    PNF20481.1    NWSH01007753    PCG62823.1    GGMS01017914    MBY87117.1    GFTR01008257    JAW08169.1    NEVH01006754    PNF36554.1    NEVH01019964    PNF22161.1    ABLF02016634    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    NEVH01002716    PNF41415.1    GFTR01008260    JAW08166.1    NEVH01023280    PNF18085.1    M95171    AAA29354.1    NNAY01003095    OXU19992.1    GGMR01013409    MBY26028.1    NEVH01026386    PNF14434.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000002358    UP000235965    UP000036403    + More
UP000054359    UP000218220    UP000215335   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    Q8T9X4    Q8I7P8   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q9XXW0   Q9BPQ0   Q93137   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   A0A139WA11   V5GNJ2   J9LC21   A0A023EYS8   V5GNF3   K7IN67   J9JS95   X1WZH0   X1WLB2   X1WNI2   A0A224XF24   J9LFC9   A0A023EZE6   A0A2S2PPK8   A0A2S2QEE0   J9KPF1   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   Q07995   A0A2J7PU96   A0A2J7R7D0   A0A3N5Z7I3   A0A2J7PQB5   A0A2J7Q6J2   A0A224XB44   A0A0J7MYU2   A0A2M4BD83   A0A1Y1LKN6   A0A2S2PR14   A0A224X6Q4   A0A2S2NJB5   J9KKL3   A0A087UCW3   J9M522   A0A2M4CV52   A0A2S2N814   A0A224XI99   A0A2M4CV42   A0A2S2NH02   A0A224X6S1   A0A087UGF5   Q8T9X4   A0A0A9YU04   A0A069DZL8   A0A0A9YJ00   J9KLB1   X1WQI9   A0A0V0G5B6   Q8I7P8   A0A023EW17   A0A224X6T4   A0A2M4BD67   A0A2M4BDV6   A0A2M4CVK2   A0A2M4BD66   A0A2M4CVF1   A0A2M4BD62   A0A2S2N6Q7   A0A2M4BDA5   A0A2S2NGV8   A0A2M4BEF4   A0A2J7RE85   A0A224X746   A0A2M4BEZ9   A0A2J7QB68   A0A2S2Q383   A0A224X6U5   A0A1Q3G5F7   A0A023F069   A0A1Y1KFR3   A0A1Q3G5J4   A0A2J7PVX3   A0A2A4IUM2   A0A2S2RAN7   A0A224XJI0   A0A2J7R6U1   A0A2J7Q0Q6   X1WXE6   A0A2J7QFL0   A0A2J7R2E1   A0A2J7RKP3   A0A224X6W2   A0A2J7PP17   V9GZF1   A0A232ENU1   A0A2S2PA10   A0A2J7PDM0  

KEGG

101745053    no KO assigned | (RefSeq) uncharacterized LOC101745053

GO

GO:0003964   GO:0004519  

Length:

743

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

18.99595

Exp number, first 60 AAs:

0.11

Total prob of N-in:

0.05443

outside

1  -  743

 

 

Pi

117.794472

Theta

15.639793

Tajima's D

0.804679

CLR

0.016009

CSRT

0.616169191540423

Interpretation

Uncertain