Gene

KWMTBOMO03431  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006369

Annotation

Rab_GTPase-interacting_factor_golgi_membrane_protein_[Operophtera_brumata]

Location

Bomo_Chr6(-):7734047-7735323      View in EpiBrowser

Full name

Protein YIPF      

Location in the cell

PlasmaMembrane   Reliability : 4.391

CDS

ATGGCTAACTATAACAATCCCAATGAATATGCATGGCAAACGCAAAGCGACAGTCAGAGTTATTCTTTTGATTCATCAAATACTTTTGGAACAACTGCCCAGACTTTAGATTTTCAAACTTTTCCCACGGATCAACAGAACTATTCCTTTGATCAGACGCAAGGCACAATTCCAGCAAACAACAACCAATACTACAATCCAAATTTTTTTACACCTGCTCCCATACCTGGAGAAGCTACAAGTGAGCCGAATGAGTTTGATGAGCCACCCCTCTTGGACGAACTTGAAATATACCCTGATAGAATTCTGGAGAAAACATTAGCGGTTCTCAATCCTTTCCATGGACAATCCAAAGCCGATGATGCAAATTTTTTACTTAGGGATACTGACATTGCTGGTCCCATAGCATTCTGCCTAGCCTTGGCAGTTTGCCTTTTTCTATCAGGCAATAAAGCCCATTTTGGGTTTGTGTATGGACTGTCAATGATGTCTGTTATATTGATGTATTTTTTACTTTCACTAATGAGTCATACAGAAGGTGTTTTTACTATTCTTAGTGTTGCCAGTGTACTGGGTTATTGTATGCTTCCTATGGTTGTCTTAGCAGGTTTAGGAATATTTATCTCTTTAGAAGGTACTGTAGGCCTCAGTATATCAGCTGTTGCAGTAATTTGGTCTGCTTTGTCTGCAAGTCGACTATTTGTCACTATGTCCGGAGATGCAGAGCAAAGACCATTAATTGCATACCCTTGTGCGCTGATTAATGGGGTCTTTGCATTACTAGTTTTGTTTTAA

Protein

MANYNNPNEYAWQTQSDSQSYSFDSSNTFGTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGEATSEPNEFDEPPLLDELEIYPDRILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIAFCLALAVCLFLSGNKAHFGFVYGLSMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEGTVGLSISAVAVIWSALSASRLFVTMSGDAEQRPLIAYPCALINGVFALLVLF

Similarity

Belongs to the YIP1 family.

Uniprot

H9JA24   A0A2H1V1Q3   A0A2A4JDI6   A0A0L7LJY5   A0A212F3A8   S4PDN6   + More
A0A194PWV8   I4DNE1   A0A194RQ26   A0A1E1W6Y8   A0A1W4W8R1   A0A088AA80   A0A232ESG9   K7J8L3   A0A158NFV1   A0A0C9QVM6   A0A336MVV3   E9IWV7   A0A151XC20   A0A2A3E6B1   F4X6T8   U5EZL8   A0A1L8DUQ8   A0A1B0F0L3   A0A195E6Q2   A0A1B0CEE0   E1ZYX1   A0A195B218   Q1HQT3   A0A1Q3FD48   B0WQX0   A0A154PKS2   Q16P52   A0A023EM05   A0A026VTT2   A0A182FY93   A0A182QEN5   A0A0P4VMB3   R4G3M7   A0A182T9E0   A0A0L0BZ81   A0A1I8MEP9   D3TMV1   A0A0V0G9M9   A0A023F877   A0NBS3   A0A182IDL7   W5JHQ8   W8CAF8   A0A1D2NC38   A0A1B0APP5   A0A1A9XXU7   A0A2M4AIF8   A0A2M4AI72   A0A1B0G8E4   B4KGL6  

Pubmed

19121390    26227816    22118469    23622113    26354079    22651552    + More
28648823    20075255    21347285    21282665    21719571    20798317    17204158    17510324    24945155    24508170    27129103    26108605    25315136    20353571    25474469    12364791    20920257    23761445    24495485    27289101    17994087   

EMBL

BABH01009291    ODYU01000245    SOQ34696.1    NWSH01001856    PCG69909.1    JTDY01000834    + More
KOB75735.1    AGBW02010586    OWR48221.1    GAIX01003596    JAA88964.1    KQ459589    KPI97503.1    AK402864    BAM19431.1    KQ459896    KPJ19420.1    GDQN01008443    JAT82611.1    NNAY01002421    OXU21309.1    AAZX01007490    ADTU01014793    GBYB01007764    JAG77531.1    UFQT01002647    SSX33845.1    GL766614    EFZ14950.1    KQ982314    KYQ57936.1    KZ288354    PBC27250.1    GL888818    EGI57870.1    GANO01000553    JAB59318.1    GFDF01003917    JAV10167.1    AJVK01007362    KQ979568    KYN20858.1    AJWK01008772    GL435242    EFN73661.1    KQ976662    KYM78521.1    DQ440361    ABF18394.1    GFDL01009550    JAV25495.1    DS232046    EDS33050.1    KQ434946    KZC12347.1    CH477793    EAT36147.1    EJY57938.1    GAPW01003275    JAC10323.1    KK108074    EZA46931.1    AXCN02001427    GDKW01000328    JAI56267.1    GAHY01001536    JAA75974.1    JRES01001123    KNC25338.1    EZ422753    ADD19029.1    GECL01001387    JAP04737.1    GBBI01001262    JAC17450.1    AAAB01008811    EAU77559.1    APCN01004734    ADMH02001211    ETN63646.1    GAMC01001340    GAMC01001339    JAC05217.1    LJIJ01000094    ODN02823.1    JXJN01001542    GGFK01007245    MBW40566.1    GGFK01007165    MBW40486.1    CCAG010000247    CH933807    EDW13216.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000053268    UP000053240    + More
UP000192223    UP000005203    UP000215335    UP000002358    UP000005205    UP000075809    UP000242457    UP000007755    UP000092462    UP000078492    UP000092461    UP000000311    UP000078540    UP000002320    UP000076502    UP000008820    UP000053097    UP000069272    UP000075886    UP000075901    UP000037069    UP000095301    UP000007062    UP000075840    UP000000673    UP000094527    UP000092460    UP000092443    UP000092444    UP000009192   

PRIDE

H9JA24   

Pfam

PF04893   Yip1        + More
PF06644   ATP11
PF03372   Exo_endo_phos
PF08040   NADH_oxidored
PF00069   Pkinase

Interpro

IPR006977   Yip1        + More
IPR010591   ATP11       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000719   Prot_kinase_dom       
IPR012575   NADH_UbQ_OxRdtase_MNLL_su       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       

SUPFAM

SSF56219   SSF56219        + More
SSF56112   SSF56112       

Gene 3D

3.60.10.10    

ProteinModelPortal

H9JA24   A0A2H1V1Q3   A0A2A4JDI6   A0A0L7LJY5   A0A212F3A8   S4PDN6   + More
A0A194PWV8   I4DNE1   A0A194RQ26   A0A1E1W6Y8   A0A1W4W8R1   A0A088AA80   A0A232ESG9   K7J8L3   A0A158NFV1   A0A0C9QVM6   A0A336MVV3   E9IWV7   A0A151XC20   A0A2A3E6B1   F4X6T8   U5EZL8   A0A1L8DUQ8   A0A1B0F0L3   A0A195E6Q2   A0A1B0CEE0   E1ZYX1   A0A195B218   Q1HQT3   A0A1Q3FD48   B0WQX0   A0A154PKS2   Q16P52   A0A023EM05   A0A026VTT2   A0A182FY93   A0A182QEN5   A0A0P4VMB3   R4G3M7   A0A182T9E0   A0A0L0BZ81   A0A1I8MEP9   D3TMV1   A0A0V0G9M9   A0A023F877   A0NBS3   A0A182IDL7   W5JHQ8   W8CAF8   A0A1D2NC38   A0A1B0APP5   A0A1A9XXU7   A0A2M4AIF8   A0A2M4AI72   A0A1B0G8E4   B4KGL6  

KEGG

101744716    K20363 protein YIPF5/7 | (RefSeq) protein YIPF5

GO

GO:0016021   GO:0005739   GO:0065003   GO:0005524   GO:0003954   GO:0004672   GO:0007283   GO:0005801   GO:1905808   GO:0070971   GO:0016020   GO:0006520   GO:0016491   GO:0004352   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR13126  

Subcellular location

Membrane  

Length:

264

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

102.9056

Exp number, first 60 AAs:

0.00309

Total prob of N-in:

0.12755

outside

1  -  130

TMhelix

131  -  148

inside

149  -  152

TMhelix

153  -  175

outside

176  -  184

TMhelix

185  -  207

inside

208  -  213

TMhelix

214  -  236

outside

237  -  245

TMhelix

246  -  263

inside

264  -  264

 

 

Pi

220.813387

Theta

197.163712

Tajima's D

0.270028

CLR

0.060499

CSRT

0.447527623618819

Interpretation

Possibly Positive selection