Gene

KWMTBOMO03427

Pre Gene Modal

BGIBMGA012813

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(+):7649677-7668655      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.263

CDS

ATGAACTTTGTAACAGTAACTCTTCTTGTTCCAGACAGTAATTATCTCTTAGCGTGTGTAAGAGATGATACAATACAGCTCATAGATCTGCGAATGAACACCATCGTGCGATCGTTCAGTAACGAAGCGTTCAAAGTTGGCTGTGACTGGTCTCGGGCTGCGTTCGGTCCCGGGGGACGTCTGCTGGCGGTTGGAGCCGCGGACGGCGTAGTCTTCGTGTGGAACACGTATTCTGGACGACTTGAAACCACTCTGAAGGATCACACGACGGCGGTGACATCTGTATCGTGGCACCCCCAGTCTGGACTACTGGCCTCAGTGGATCGAGGAAAACGTGCTCTCATATGGGGGGACTTAAGGTATAGAAATTGTATCAAGAAGGCGCAAACCTACCCCGGTGCAGACATTGGGTCAGATCATAACCCAGTGGTGGTAGACGTAGCATGCAAGCTGAAGAAGTTGCAGCCAAAGAGAATGGATCGAAGGCCAAACGTACGGAAGCTTGCTGAGCCCGACACACGAGCGAAGACCCACACCGCTATTAATCAATGGGCCAACGATCGTCGCACTGAAACCACTGCCTCTGACCTCGACACGTGGACTAGTCTAAAGCGAAGTGTAAAAGATATATGTCACCAATACCTCCAACCATCACAACTGGTCAAAAAACAAGATTGGATGACAGATTCAATTTTGCAGCTTATGGAAGACAGGAGGCAATTTAAGGGTACAAATCCAGTAATGTATAAGCAAATCGATGTCACCATTCGAAAAGAGATTGCGAAAGCCAAGAATGATTACTACAGCAATAAGTGCGCGCACTTGGAAGATCTCCTTCGTAAACATGACAGCTTCAATGCGCACAAGCACATCAAGGAAATGGTTGGTCATAGACGGAAATCAATGAATACTCTGACCGATGCAGGTGGGAACCTCATTCTTGACACCGATGGCAAAAAGAGAGTGTGGTGTGACTATGTTGCAGAGATGTTTGCGGACTCATCAAGGAACATTTCACCGATCACTGATCGGACTGGTCCAGCTATGTTGCGATCTGAGGTTTTGCGGGCCTTGAAAGCTGCTAAAACAGGTAAATTACCGGGTCCTGATAATATACCGATCGAAATACTAAAGTTGCTGGAAGAAGATCAACTGGACGTTCTCACACAGTTCTTCAACAACATCTACGAAACAGGCAATCTTCCTAGTGACTGGCTAAAATCCACATTCATCACGATACCCAAGAAGCAAAATGCCAAAAAATGTGGAGAGTATCGTATGATTAGTCTGATGAGCCATGTCCTAAAAGTATTCTTGAACATCATACAGAATAGAATACGGCCAAAATGTGATGAACAACTGGGCGATAGCCAATTTGGATTTCGATCTGGTGTTAGCACCAGAGAAGCTCTTTTCGCTCTCAACGTTCTCGTACAGAAATGCAGAGACATGCAAACTGATGTCTTTTTGTGCTTCATAGACTACGAAAAGGCATTTGACCGAGTTAAACATCATCAACTTTTTAGCCTTTTATGTGATATTGGTCTGGATGGTAAGGACGTCAGAATCATCCGCAACCTGTACGAGAAGCAGGTGGCTACGATAAGAGTCGAAAATGAGGAAACCGACCAAGTTGAGATCTGTCGTGCGGTCCGGCAGGGGATGAACATTTGGCTAAAGGATAAGAAGATAAGGAAAATAATTTAA

Protein

MNFVTVTLLVPDSNYLLACVRDDTIQLIDLRMNTIVRSFSNEAFKVGCDWSRAAFGPGGRLLAVGAADGVVFVWNTYSGRLETTLKDHTTAVTSVSWHPQSGLLASVDRGKRALIWGDLRYRNCIKKAQTYPGADIGSDHNPVVVDVACKLKKLQPKRMDRRPNVRKLAEPDTRAKTHTAINQWANDRRTETTASDLDTWTSLKRSVKDICHQYLQPSQLVKKQDWMTDSILQLMEDRRQFKGTNPVMYKQIDVTIRKEIAKAKNDYYSNKCAHLEDLLRKHDSFNAHKHIKEMVGHRRKSMNTLTDAGGNLILDTDGKKRVWCDYVAEMFADSSRNISPITDRTGPAMLRSEVLRALKAAKTGKLPGPDNIPIEILKLLEEDQLDVLTQFFNNIYETGNLPSDWLKSTFITIPKKQNAKKCGEYRMISLMSHVLKVFLNIIQNRIRPKCDEQLGDSQFGFRSGVSTREALFALNVLVQKCRDMQTDVFLCFIDYEKAFDRVKHHQLFSLLCDIGLDGKDVRIIRNLYEKQVATIRVENEETDQVEICRAVRQGMNIWLKDKKIRKII

Uniprot

D5LB38   A0A2A4JBK9   A0A0B7BU85   A0A0B7BRW7   A0A2V9X8L4   A0A0B7BTM4   + More
A0A0B7BU90   A0A0B7BR36   A0A0B7BRV7   A0A1W7RAL1   A0A085NA39   A0A076N1B6   A0A2J7QCR1   A0A2J7PCW0   A0A2J7PWT0   A0A0B1PP52   A0A2J7QPT5   A0A076N3Z4   A0A023GD30   A0A2J7PMY4   A0A2J7Q6F7   A0A2J7QLQ1   A0A2J7RL19   A0A2J7Q7C6   A0A2J7PC89   A0A2J7PTB8   A0A2J7Q3K9   A0A2J7PZN7   A0A2J7RRE4   A0A2J7PNH4   A0A2J7PFC5   A0A2J7QNQ3   A0A2J7RBL5   A0A2J7QCG2   A0A2J7QSZ5   A0A2J7QMC5   A0A2J7RPX5   A0A2J7PBF1   A0A2J7PSI0   A0A2J7Q6P7   A0A2J7PF68   A0A2J7Q649   A0A2J7RBL1   A0A2J7QUD0   A0A2J7R8G1   A0A2J7R8P5   A0A2J7QI56   A0A2J7RIL8   A0A2J7PT27   A0A2J7QJJ9   A0A2J7QR01   A0A2J7R901   A0A2J7REE7   A0A2J7QEJ0   A0A2J7PTY0   A0A2J7PW81   A0A2J7PSH5   A0A2J7PVW0   A0A2J7Q6T5   A0A2J7PMJ3   A0A2J7RP47   A0A2J7RJY3   A0A2J7RLI7   A0A2J7Q6A8   A0A2J7PQA3   A0A2J7RGX2   A0A2J7QGX8   A0A2J7PX03   A0A2J7Q2Z3   A0A2J7QUN7   A0A2J7QH51   A0A2J7R4R4   A0A2J7Q5D5   A0A2J7Q0C6   A0A2J7Q3T8   A0A2J7QKB0   A0A2J7PHM9   A0A2J7QGJ2   A0A2J7QGT4   A0A2S2PMS6   A0A2A4JXP9   J9KV41   A0A146LUY8   A0A2J7PHX9   A0A2J7Q4I0   A0A2J7R7D2   D7F175   A0A2J7R2Y0   H3J6U9   D7F167  

Pubmed

20470440    24929829    26823975   

EMBL

GU815089    ADF18552.1    NWSH01001998    PCG69477.1    HACG01048870    CEK95735.1    + More
HACG01048883    CEK95748.1    QIAP01000240    PYX61602.1    HACG01048876    CEK95741.1    HACG01048875    CEK95740.1    HACG01048879    CEK95744.1    HACG01048873    CEK95738.1    GFAH01000222    JAV48167.1    KL367526    KFD66335.1    KF881087    AIJ27486.1    NEVH01016127    PNF26367.1    NEVH01026403    PNF14170.1    NEVH01020868    PNF20797.1    KN538403    KHJ42451.1    NEVH01012087    PNF30599.1    KF881086    AIJ27485.1    GBBM01003639    JAC31779.1    NEVH01023960    PNF17698.1    NEVH01017478    PNF24170.1    NEVH01013243    PNF29503.1    NEVH01002700    PNF41535.1    NEVH01017443    PNF24485.1    NEVH01027067    PNF13944.1    NEVH01021610    PNF19569.1    NEVH01019066    PNF23173.1    NEVH01020333    PNF21790.1    NEVH01000609    PNF43402.1    NEVH01023953    PNF17877.1    NEVH01025668    PNF15041.1    NEVH01012564    PNF30212.1    NEVH01005896    PNF38212.1    NEVH01016289    PNF26277.1    NEVH01011205    PNF31711.1    NEVH01013215    PNF29703.1    NEVH01020851    NEVH01013954    NEVH01006574    NEVH01001358    NEVH01001354    PNF21237.1    PNF28332.1    PNF37782.1    PNF42792.1    PNF42884.1    NEVH01027104    PNF13657.1    NEVH01021928    PNF19298.1    NEVH01017460    PNF24248.1    NEVH01026085    PNF14968.1    NEVH01017540    PNF24056.1    PNF38208.1    NEVH01011186    PNF32183.1    NEVH01016335    NEVH01006721    PNF25462.1    PNF37115.1    PNF37211.1    NEVH01013959    PNF28275.1    NEVH01003500    PNF40666.1    NEVH01021921    PNF19488.1    NEVH01013553    PNF28765.1    NEVH01012082    PNF31006.1    PNF37310.1    NEVH01005277    PNF39212.1    NEVH01015309    PNF27009.1    NEVH01021219    PNF19787.1    NEVH01020937    PNF20581.1    NEVH01021931    PNF19256.1    NEVH01020940    PNF20478.1    NEVH01017452    PNF24293.1    NEVH01023985    PNF17546.1    NEVH01002141    PNF42599.1    NEVH01002982    PNF41147.1    NEVH01002684    PNF41704.1    NEVH01017534    PNF24114.1    NEVH01022640    NEVH01008218    NEVH01005885    PNF18513.1    PNF34430.1    PNF38481.1    NEVH01003750    PNF40091.1    NEVH01014359    PNF27813.1    NEVH01020865    PNF20863.1    NEVH01019075    PNF22955.1    NEVH01010501    PNF17732.1    PNF32290.1    NEVH01014358    PNF27914.1    NEVH01007402    PNF35815.1    NEVH01017570    PNF23798.1    NEVH01019971    PNF22037.1    NEVH01019064    PNF23230.1    NEVH01013275    PNF29009.1    NEVH01025135    PNF15828.1    NEVH01018372    NEVH01014371    NEVH01011208    NEVH01002697    NEVH01002552    PNF23678.1    PNF27673.1    PNF31697.1    PNF41592.1    PNF42118.1    PNF27789.1    GGMR01018096    MBY30715.1    NWSH01000469    PCG76200.1    ABLF02013955    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1    NEVH01025130    PNF15934.1    NEVH01018380    PNF23492.1    NEVH01006734    PNF36732.1    FJ265560    ADI61828.1    NEVH01007824    PNF35184.1    AAGJ04118689    AAGJ04161747    FJ265552    ADI61820.1   

Proteomes

UP000218220    UP000247801    UP000235965    UP000007819    UP000007110   

PRIDE

D5LB38    D7F175    D7F167   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
IPR000637   HMGI/Y_DNA-bd_CS       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4JBK9   A0A0B7BU85   A0A0B7BRW7   A0A2V9X8L4   A0A0B7BTM4   + More
A0A0B7BU90   A0A0B7BR36   A0A0B7BRV7   A0A1W7RAL1   A0A085NA39   A0A076N1B6   A0A2J7QCR1   A0A2J7PCW0   A0A2J7PWT0   A0A0B1PP52   A0A2J7QPT5   A0A076N3Z4   A0A023GD30   A0A2J7PMY4   A0A2J7Q6F7   A0A2J7QLQ1   A0A2J7RL19   A0A2J7Q7C6   A0A2J7PC89   A0A2J7PTB8   A0A2J7Q3K9   A0A2J7PZN7   A0A2J7RRE4   A0A2J7PNH4   A0A2J7PFC5   A0A2J7QNQ3   A0A2J7RBL5   A0A2J7QCG2   A0A2J7QSZ5   A0A2J7QMC5   A0A2J7RPX5   A0A2J7PBF1   A0A2J7PSI0   A0A2J7Q6P7   A0A2J7PF68   A0A2J7Q649   A0A2J7RBL1   A0A2J7QUD0   A0A2J7R8G1   A0A2J7R8P5   A0A2J7QI56   A0A2J7RIL8   A0A2J7PT27   A0A2J7QJJ9   A0A2J7QR01   A0A2J7R901   A0A2J7REE7   A0A2J7QEJ0   A0A2J7PTY0   A0A2J7PW81   A0A2J7PSH5   A0A2J7PVW0   A0A2J7Q6T5   A0A2J7PMJ3   A0A2J7RP47   A0A2J7RJY3   A0A2J7RLI7   A0A2J7Q6A8   A0A2J7PQA3   A0A2J7RGX2   A0A2J7QGX8   A0A2J7PX03   A0A2J7Q2Z3   A0A2J7QUN7   A0A2J7QH51   A0A2J7R4R4   A0A2J7Q5D5   A0A2J7Q0C6   A0A2J7Q3T8   A0A2J7QKB0   A0A2J7PHM9   A0A2J7QGJ2   A0A2J7QGT4   A0A2S2PMS6   A0A2A4JXP9   J9KV41   A0A146LUY8   A0A2J7PHX9   A0A2J7Q4I0   A0A2J7R7D2   D7F175   A0A2J7R2Y0   H3J6U9   D7F167  

PDB

5NUV     E-value=1.92951e-23,     Score=272

KEGG

101744668    K17890 autophagy-related protein 16-1 | (RefSeq) autophagy-related protein 16-1-like

PATHWAY

04136    Autophagy - other - Bombyx mori (domestic silkworm)
04140    Autophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0003964   GO:0004519   GO:0006355   GO:0005515   GO:0008270   GO:0015074   GO:0003700   GO:0005634   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR23227  

Length:

568

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07343

Exp number, first 60 AAs:

0.01194

Total prob of N-in:

0.00321

outside

1  -  568

 

 

Pi

298.1491

Theta

192.016051

Tajima's D

0.581978

CLR

1.032024

CSRT

0.538023098845058

Interpretation

Uncertain