SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03423
Pre Gene Modal
BGIBMGA006504
Annotation
PREDICTED:_autophagy-related_protein_16-1-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.585 Nuclear   Reliability : 1.532
 

Sequence

CDS
ATGTATGAAACAAATATGTCAGAATTGCAAGGTTTAAATCAAGTGCTACGCGATGAACATCAAGCCTTACAGATAGCATTTGCATCTATTGAAGAAAAACTGAGGAAGGCCCAGGACGAAAATCGATCACTGGTTGAAAGACTTATAAAGTATAAATCAAAAGATGCCGATAAAATGAACGAAGAAAATGAACATTATTTAAAAAAGAAAAGCGACAAACTACGGAAGGAATTGGAAGAGGCCGCAAGGGAGGGCGGAAGTCGAAGCAGTGGCGGCTCAGCGGGAAGCACAGACGACAAGATAATGGATTCCTTGCCTTACTATGCGACGGCTTTGCCCTCCAAAGTTGCTATTCGATTTGACGCGCACGATGGAGAAGTGTATGCCGTAAAATGGAGTCCGACAGATCGACTGGTGGCGACCGGCGGCGCGGACAGAAAAGTAAAGTTATGGGATGTTTCGAAAAGTATTGTTGAAAACAAGGGTACATTAGTTGGTTCGAATGCGGGTGTCATGTCTGTGGACTTTGATTCCACGGGCGCGTACATTGTGGGCGCTTCCAATGACTTCGCGAGTCGCGTATGGACGGTCGCCGATCAGAGGTTAAGGGTCTATTAA
Protein
MYETNMSELQGLNQVLRDEHQALQIAFASIEEKLRKAQDENRSLVERLIKYKSKDADKMNEENEHYLKKKSDKLRKELEEAAREGGSRSSGGSAGSTDDKIMDSLPYYATALPSKVAIRFDAHDGEVYAVKWSPTDRLVATGGADRKVKLWDVSKSIVENKGTLVGSNAGVMSVDFDSTGAYIVGASNDFASRVWTVADQRLRVY

Summary

EMBL
BABH01009278    BABH01009279    BABH01009280    BABH01009281    ODYU01003825    SOQ43066.1    + More
AGBW02009607    OWR50333.1    KQ459589    KPI97510.1    KQ459896    KPJ19412.1    NWSH01002817    PCG67486.1    KQ434869    KZC09392.1    KQ414607    KOC69488.1    AAZX01014711    GL888568    EGI59431.1    KQ976403    KYM92251.1    GL451689    EFN78782.1    QOIP01000001    RLU26500.1    LJIG01000266    KRT86674.1    AJWK01023972    KQ761907    OAD56449.1    DS235829    EEB17966.1    GEZM01026119    JAV87230.1    GEZM01026123    JAV87226.1    GGMS01013176    MBY82379.1    KQ977935    KYM98742.1    GEDC01010156    JAS27142.1    KQ971326    EEZ99890.2    GFDF01003421    JAV10663.1    GECU01010305    JAS97401.1    ABLF02031505    KQ981905    KYN33622.1    GECU01033920    JAS73786.1    GEZM01026124    JAV87225.1    GECU01026414    JAS81292.1    GEZM01026122    JAV87227.1    KZ288196    PBC33758.1    KQ980713    KYN14218.1    KQ982649    KYQ53134.1    GEDC01021940    JAS15358.1    GEBQ01021238    JAT18739.1    NNAY01001268    OXU24556.1    GBHO01012856    JAG30748.1    GBRD01001944    JAG63877.1    GBHO01039013    JAG04591.1    GDHC01016035    JAQ02594.1    GBHO01039015    JAG04589.1    GBRD01001946    JAG63875.1    GBHO01039014    JAG04590.1    KQ435859    KOX70503.1    CVRI01000012    CRK89337.1    GBBI01002867    JAC15845.1    GBGD01001072    JAC87817.1    GDIP01172899    GDIQ01194804    LRGB01001036    JAJ50503.1    JAK56921.1    KZS13642.1    GBXI01003280    JAD11012.1    GDIQ01048312    JAN46425.1    GDIQ01043515    JAN51222.1    GDIP01174585    GDIQ01109427    GDIQ01039962    JAJ48817.1    JAL42299.1    GDIQ01119581    JAL32145.1    GDIQ01056062    JAN38675.1    GDIP01167081    JAJ56321.1    GDIQ01041061    JAN53676.1    GDIQ01094888    JAL56838.1    GDIQ01131344    JAL20382.1    GDIQ01226145    JAK25580.1    GAKP01016356    JAC42596.1    GDIQ01225038    JAK26687.1    GDIQ01220897    JAK30828.1    GDIQ01237052    JAK14673.1    GDIQ01223798    JAK27927.1    GDIQ01238148    JAK13577.1    GDIQ01144674    JAL07052.1    GDIP01115643    JAL88071.1    GDIP01155453    JAJ67949.1    GDIQ01183124    JAK68601.1    GDIQ01142030    JAL09696.1    GDHF01010056    JAI42258.1    GDIQ01068609    JAN26128.1    GDIP01018766    JAM84949.1    GDIQ01117991    JAL33735.1    GAMC01019635    GAMC01019633    JAB86920.1    GGMR01000694    MBY13313.1    UFQT01000065    SSX19289.1    AJVK01014987    GDIP01172952    JAJ50450.1    KA648328    AFP62957.1    GDHF01022181    JAI30133.1    GDHF01015193    JAI37121.1    GAKP01016357    JAC42595.1    GBXI01015684    JAC98607.1    NEDP02005438    OWF40905.1    GAMC01019636    JAB86919.1    GFXV01004980    MBW16785.1    GDIQ01011130    JAN83607.1    GDIQ01208586    JAK43139.1    LN830714    CFW94223.1    GDIP01121435    JAL82279.1    GDIQ01109426    JAL42300.1    NEVH01000595    PNF43642.1   
Pfam
PF00400   WD40        + More
PF08614   ATG16
Interpro
IPR001680   WD40_repeat        + More
IPR013923   Autophagy-rel_prot_16       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR020472   G-protein_beta_WD-40_rep       
SUPFAM
SSF50978   SSF50978       
Gene 3D
PDB
5NUV     E-value=6.5302e-28,     Score=305

Ontologies

Topology

Length:
205
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03336
Exp number, first 60 AAs:
0
Total prob of N-in:
0.12886
outside
1  -  205
 
 

Population Genetic Test Statistics

Pi
197.007283
Theta
184.674924
Tajima's D
0.205031
CLR
0.040802
CSRT
0.429428528573571
Interpretation
Uncertain
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