Gene

KWMTBOMO03416

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr6(-):7158683-7159831      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.479 Mitochondrial   Reliability : 1.137 Nuclear   Reliability : 1.759

CDS

ATGGTGGAGGTTGGTACTAGGGAAAATATAATGACGATACGAGTTGGCGCTACTCTTACTGATGAGTTTGACGTTGTGACTGGACTCAGGCAAGGGGACGCTCTGTCACCAATGCTGTTCAACCAAGCACTTGAACACGTCATACGGAAAGTGAACACATATAATGGCGGAGTGTGGCTTAATGGACAGCATAAGGTGATAGGGTATGCCGATGAGCTTGTTCTACTAGGAGAAAGAAAGCAGCACGTTATAGACGCATTCAACTGCTTCCAACAAGAAGCCTCTTGGATTGGCCTTCGTGTGAGCCACGACAAGACAGAGTATCTTCACATTTGTCGACACAAAAACATAAGACGGAAGCGAGAAGACTTAGTTGTGGGAAATACGAGATACAAAGGGGTGGCCAAATTCCAGTTCGTTGGCTGCATTGTAAAAGACACCAATGACAAGGAAGACGAGATCGAAATACGTGTACAAAATACCCTACAATGCAGTGCAGCCCTGCATCCGGTCCTCTCTTCGAAGTTACTAAGCAGGCGTACTAAGGTTCGGATATACAAGACTATAGTCAGACCGATCTTATTGTATGGATGCGAAGCATGGACGCTTACACAAAAAGAAGAGACAAAACTTCTCGTGACGGAGCGAAAGATACTGAGAAAGATCCGGATAGCACATCCGGAAAAACAAGGACGTGGAGAGGCTTTTTGA

Protein

MVEVGTRENIMTIRVGATLTDEFDVVTGLRQGDALSPMLFNQALEHVIRKVNTYNGGVWLNGQHKVIGYADELVLLGERKQHVIDAFNCFQQEASWIGLRVSHDKTEYLHICRHKNIRRKREDLVVGNTRYKGVAKFQFVGCIVKDTNDKEDEIEIRVQNTLQCSAALHPVLSSKLLSRRTKVRIYKTIVRPILLYGCEAWTLTQKEETKLLVTERKILRKIRIAHPEKQGRGEAF

Uniprot

A0A1B6G8C4   A0A1B0DRK3   A0A2S2Q389   A0A2J7Q3Q5   A0A2P8YLJ1   A0A2S2N711   + More
A0A2S2PT92   A0A2P8ZET0   A0A1B6I2W4   A0A2S2PIT5   A0A0N8NYW2   X1X4N5   A0A3N0CRI3   J9L442   A0A1B6JBJ4   A0A0P8Y4M6   A0A0P8Y5F3   J9M108   A0A2S2QTM1   J9KUA2   A0A2P8ZEA9   A0A0N8P264   X1WLM1   J9LNT9   A0A0N8NZU6   A0A2P8ZGH9   A0A367YPS2   A0A2P8YLY7   A0A0P8Y6K1   A0A0P8ZWR4   A0A2P8YTB7   A0A2P8YPE1   A0A3N0CQC8   A0A2S2N6G4   A0A2P8ZCA4   A0A2S2R8R0   A0A0P9A604   A0A2S2PCU1   A0A2P8YHZ7   A0A2P8YYC9   A0A069DWW0   A0A2P8ZFZ0   A0A060Q6A2   J9LBF3   X1WT72   J9L287   J9KYG1   A0A2P8ZIH1   A0A0K8TJE5   A0A2P8Y2S1   A0A2S2NQ16   A0A2P8YWA2   A0A2P8ZLT6   A0A2P8Z488   J9KX58   J9L6X2   A0A2S2P3U1   A0A2P8Z313   A0A2P8YZ65   J9LX20   X1X8T7   A0A2P8YFW0   A0A023F0H0   J9L8F2   A0A023EZ68   A0A0A9Y0T5   A0A0K8S3X2   J9KNQ8   K7JQB0   X1X7B0   J9LFP1   A0A2P8XT91   J9LEU9   J9KH77   A0A2P8XC08   X1XN59   X1WKD5   X1X9T6   A0A0A1WRZ2   X1WZC0   J9KT01   J9L7U5   A0A0A9Z1E7   A0A2P8Y7F0   A0A023F0M0   A0A2P8XR21   J9L521   A0A146KNZ7   J9LUN5   A0A2P8YI77   A0A0K8TRS6   A0A0K8SN56   J9LN91   J9KHI9   A0A2S2QBB5   J9KJF3   A0A2S2P2F5   J9LWM8   A0A0V0G616   A0A0U4HM41  

Pubmed

29403074    17994087    26334808    25474469    25401762    20075255    + More
25830018    26823975    26369729    25527032   

EMBL

GECZ01011079    JAS58690.1    AJVK01001578    GGMS01002991    MBY72194.1    NEVH01019065    + More
PNF23216.1    PYGN01000510    PSN45119.1    GGMR01000301    MBY12920.1    GGMR01020071    MBY32690.1    PYGN01000078    PSN55011.1    GECU01026439    JAS81267.1    GGMR01016675    MBY29294.1    CH902961    KPU72636.1    ABLF02059747    RAPH01000014    RNL66055.1    ABLF02031649    GECU01011157    JAS96549.1    CH902619    KPU76535.1    CH904714    KPU81814.1    ABLF02005298    ABLF02018860    GGMS01011865    MBY81068.1    ABLF02026145    ABLF02026146    ABLF02042729    PYGN01000082    PSN54842.1    CH905131    KPU81852.1    ABLF02010115    ABLF02030763    ABLF02034262    CH902657    KPU75308.1    PYGN01000064    PSN55609.1    QOUI01000020    RCK67885.1    PYGN01000502    PSN45243.1    CH902653    KPU74858.1    CH902626    KPU79149.1    PYGN01000372    PSN47498.1    PYGN01000451    PSN46127.1    RAPH01000016    RNL65702.1    GGMR01000126    MBY12745.1    PYGN01000107    PSN54137.1    GGMS01017110    MBY86313.1    CH902621    KPU81727.1    GGMR01014652    MBY27271.1    PYGN01000580    PSN43876.1    PYGN01000287    PSN49259.1    GBGD01000331    JAC88558.1    PYGN01000070    PSN55417.1    HE799691    CCH14900.1    ABLF02003877    ABLF02042991    ABLF02020712    ABLF02020717    ABLF02054820    ABLF02027703    ABLF02061609    ABLF02022322    ABLF02022323    PYGN01000047    PSN56294.1    GBRD01000202    JAG65619.1    PYGN01001004    PSN38555.1    GGMR01006433    MBY19052.1    PYGN01000324    PSN48495.1    PYGN01000020    PSN57453.1    PYGN01000203    PSN51319.1    ABLF02002110    ABLF02018097    ABLF02043469    ABLF02056908    GGMR01011466    MBY24085.1    PYGN01000219    PSN50892.1    PYGN01000274    PSN49532.1    ABLF02032855    ABLF02009557    ABLF02016497    ABLF02041313    ABLF02041567    ABLF02062088    PYGN01000629    PSN43121.1    GBBI01004263    JAC14449.1    ABLF02065752    GBBI01004199    JAC14513.1    GBHO01016952    JAG26652.1    GBRD01017846    JAG47981.1    ABLF02039015    AAZX01023614    ABLF02002294    ABLF02066124    PYGN01001382    PSN35227.1    ABLF02019049    ABLF02067155    ABLF02018925    PYGN01003402    PSN29545.1    ABLF02011153    ABLF02057094    ABLF02063363    ABLF02036907    ABLF02036915    ABLF02036922    ABLF02041419    GBXI01013084    JAD01208.1    ABLF02037000    ABLF02003651    ABLF02007294    ABLF02007295    ABLF02056183    ABLF02016112    GBHO01006441    JAG37163.1    PYGN01000836    PSN40188.1    GBBI01004198    JAC14514.1    PYGN01001494    PSN34463.1    ABLF02009558    ABLF02057180    GDHC01021627    JAP97001.1    ABLF02016676    PYGN01000577    PSN43959.1    GDAI01000742    JAI16861.1    GBRD01011073    JAG54751.1    ABLF02022061    ABLF02019047    GGMS01005820    MBY75023.1    ABLF02036816    GGMR01010991    MBY23610.1    ABLF02042851    GECL01002632    JAP03492.1    KU311054    ALX81665.1   

Proteomes

UP000092462    UP000235965    UP000245037    UP000007801    UP000007819    UP000279711    + More
UP000252770    UP000002358   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2
PF05699   Dimer_Tnp_hAT
PF13359   DDE_Tnp_4
PF17919   RT_RNaseH_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR027806   HARBI1_dom       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A1B6G8C4   A0A1B0DRK3   A0A2S2Q389   A0A2J7Q3Q5   A0A2P8YLJ1   A0A2S2N711   + More
A0A2S2PT92   A0A2P8ZET0   A0A1B6I2W4   A0A2S2PIT5   A0A0N8NYW2   X1X4N5   A0A3N0CRI3   J9L442   A0A1B6JBJ4   A0A0P8Y4M6   A0A0P8Y5F3   J9M108   A0A2S2QTM1   J9KUA2   A0A2P8ZEA9   A0A0N8P264   X1WLM1   J9LNT9   A0A0N8NZU6   A0A2P8ZGH9   A0A367YPS2   A0A2P8YLY7   A0A0P8Y6K1   A0A0P8ZWR4   A0A2P8YTB7   A0A2P8YPE1   A0A3N0CQC8   A0A2S2N6G4   A0A2P8ZCA4   A0A2S2R8R0   A0A0P9A604   A0A2S2PCU1   A0A2P8YHZ7   A0A2P8YYC9   A0A069DWW0   A0A2P8ZFZ0   A0A060Q6A2   J9LBF3   X1WT72   J9L287   J9KYG1   A0A2P8ZIH1   A0A0K8TJE5   A0A2P8Y2S1   A0A2S2NQ16   A0A2P8YWA2   A0A2P8ZLT6   A0A2P8Z488   J9KX58   J9L6X2   A0A2S2P3U1   A0A2P8Z313   A0A2P8YZ65   J9LX20   X1X8T7   A0A2P8YFW0   A0A023F0H0   J9L8F2   A0A023EZ68   A0A0A9Y0T5   A0A0K8S3X2   J9KNQ8   K7JQB0   X1X7B0   J9LFP1   A0A2P8XT91   J9LEU9   J9KH77   A0A2P8XC08   X1XN59   X1WKD5   X1X9T6   A0A0A1WRZ2   X1WZC0   J9KT01   J9L7U5   A0A0A9Z1E7   A0A2P8Y7F0   A0A023F0M0   A0A2P8XR21   J9L521   A0A146KNZ7   J9LUN5   A0A2P8YI77   A0A0K8TRS6   A0A0K8SN56   J9LN91   J9KHI9   A0A2S2QBB5   J9KJF3   A0A2S2P2F5   J9LWM8   A0A0V0G616   A0A0U4HM41  

KEGG

105843006    no KO assigned | (RefSeq) uncharacterized LOC105843006

GO

GO:0003964   GO:0004519   GO:0046983   GO:0006355   GO:0003723   GO:0006278   GO:0003700   GO:0005634   GO:0000287   GO:0006270   GO:0042555   GO:0048384  

Length:

236

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03147

Exp number, first 60 AAs:

0.00209

Total prob of N-in:

0.08689

outside

1  -  236

 

 

Pi

195.899717

Theta

136.639211

Tajima's D

1.362659

CLR

0.182843

CSRT

0.757162141892905

Interpretation

Uncertain