Gene

KWMTBOMO03411

Pre Gene Modal

BGIBMGA004264

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_17.6_[Exaiptasia_pallida]

Location

Bomo_Chr6(-):7100719-7102201      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.106

CDS

ATGACTGAAACACCCACAACAAACATGGTGTCAGGTGTGGGGTTCCTGCCACTTTTACCCAATATGGATTTCAAAGGTAACCTTGCCGAAAATTTCAAAATGTATCGTCAAAGGTTGGAGATATATTTGTCTGCTAATGGCCTTGATGACGCCAAAGACAAAAGAAAAATATCAATTCTGCTGAATTTTATTGGCGAAAACGGAATCAAAATCTACAATTCTTTCAACTTAAACGCATCTGAATCACATACTTTTGAACACGTGCTCAAAAAGTTTGAGGCGTACTTTGAACCAAAGAAAAGTCTAACTATAGCAAGGAACGAGTTTTTTACTGTTACACAAGATGAAGACAGGTTGGAGGATTACTTTCAAAGAGTAATAAATCTCGGTATTCAATGCGAACTTGGAGATCTCAGAGAAGGGTTGACAGTGGGAAAGATAATTTCAGGGTTAGACTCCAAATATAATAATCTCAAAACACGATTAATGTCGGAAGACGATAGTAAATTAACATTAGATTATGTTATGAAATACTTACTGAGTGCCGAAACCTCTAGAAAATATATAGAAGAAAAAACAAATTCCAAAGACAGCGATGAATCCTCCATCCTATATGTTAATAAAAAATCAATAAGGAACTGTAGAAACTGTGGCACATCTCATAATATAAATAAATGCCCAGCATACGGCAAGGAGTGTCTGAAGTGCAAGAAACTTAACCATTTTAGTAAAGTATGCAGATCAGCCAAGAAACCAAATTTTTATCAAAAGCAAGTCAATGTCCTTGAGGATCCAGATAAGAACAAAGAGGATGAAGCTCAAGGAGATTTCTTTGTTGGTTATGCAGGCAATGAAATAATTCAAGATTTTACAGTCAATAACATCAAAATTCCCATCAAAATGGACACTGGAGCTGCATGCAACGTGATTGGGAGCGAATGA

Protein

MTETPTTNMVSGVGFLPLLPNMDFKGNLAENFKMYRQRLEIYLSANGLDDAKDKRKISILLNFIGENGIKIYNSFNLNASESHTFEHVLKKFEAYFEPKKSLTIARNEFFTVTQDEDRLEDYFQRVINLGIQCELGDLREGLTVGKIISGLDSKYNNLKTRLMSEDDSKLTLDYVMKYLLSAETSRKYIEEKTNSKDSDESSILYVNKKSIRNCRNCGTSHNINKCPAYGKECLKCKKLNHFSKVCRSAKKPNFYQKQVNVLEDPDKNKEDEAQGDFFVGYAGNEIIQDFTVNNIKIPIKMDTGAACNVIGSE

Uniprot

A0A2G8L9H5   A0A3P8Q6C6   A0A3B3C9X5   A0A3P9HT22   A0A3P9M8I3   A0A3B3HLX7   + More
A0A2G8KKG5   X1WTY2   A0A1A8UGA0   A0A087U9K1   A0A3B1JKR1   A0A2S2N8I3   A0A3P8S414   A0A212FHD4   A0A2S2NL10   A0A1A8IVJ0   A0A1S4E819   A0A1Y1MUX5   A0A1A8D4P4   A0A146SN99   A0A1Y1M671   A0A146S5H9   A0A1S3DM59   A0A3B3I1S4   A0A3Q0J4U3   A0A3P9HXP1   A0A1Y1MCJ7   A0A069DY08   A0A069DZS8   A0A1Y1NN34   L7LWW6   A0A0A9Z4Y4   A0A1A8JBP0   A0A2A4K615   A0A1Y1LR12   J9M4C2   A0A3P8QAD1   A0A2G8LMB1   A0A146LC45   A0A146TAZ6   I3KX76   A0A3Q0J653   A0A1I8NEP4   A0A075EIL5   A0A1I8NEN3   A0A1I8NEQ0   A0A1I8NEP7   A0A1Y1NHV7   A0A2S2NI46   I3KYE2   A0A2G8KBJ0   X1XQZ7   T1I2W9   A0A023EY30   A0A3P9AYU2   T1IA98   A0A3P8RKT7   A0A2G8KB94   A0A1S3JEC7   A0A3P8PD24   A0A3Q0JLN5   A0A1S3DS68   A0A3P8RHF8   J9LNB8   A0A151IWV0   A0A3Q0J548   A0A1S3ICH8   A0A3Q0JFZ1   A0A2G8KHQ8   J9LDY4   A0A1B8XWD8   J9JQ26   A0A1Y1LNL5   A0A1Y1JV53   A0A087UXZ8   A0A1Y1KPK9   T1HVY1   A0A1Y1LZ99   A0A2G8KFU3   A0A1L8H7D0   A0A1Y1K454   A0A1S3HTD1   A0A3Q0JKH1   A0A1A8B469   J9LYD2   A0A2G8L310   A0A2G8KVE9   A0A151X058   A0A224Z9B6   A0A1S3DNR0   J9K926   A0A1Y1LB52   A0A1S3DM37   A0A1S3DH71   A0A146PYY4   A0A151JNU9   A0A1Y1NAD7  

Pubmed

29023486    29451363    17554307    25329095    22118469    28004739    + More
26334808    25576852    25401762    26823975    25186727    25315136    25201971    25474469    20431018    27762356    28797301   

EMBL

MRZV01000161    PIK56894.1    MRZV01000519    PIK48493.1    ABLF02013930    ABLF02013934    + More
HADY01023773    HAEJ01006887    SBS47344.1    KK118858    KFM74040.1    GGMR01000868    MBY13487.1    AGBW02008504    OWR53150.1    GGMR01005013    MBY17632.1    HAED01014930    SBR01375.1    GEZM01020000    JAV89472.1    HADZ01022257    SBP86198.1    GCES01104253    JAQ82069.1    GEZM01041944    JAV80090.1    GCES01110503    JAQ75819.1    GEZM01035137    JAV83383.1    GBGD01000119    JAC88770.1    GBGD01000115    JAC88774.1    GEZM01001974    JAV97427.1    GACK01009641    JAA55393.1    GBHO01004090    JAG39514.1    HAED01020456    SBR07020.1    NWSH01000088    PCG79705.1    GEZM01050758    JAV75411.1    ABLF02038957    MRZV01000033    PIK61397.1    GDHC01013957    JAQ04672.1    GCES01096219    JAQ90103.1    AERX01076149    KF319019    AIE48224.1    GEZM01001973    JAV97431.1    GGMR01004179    MBY16798.1    AERX01070080    MRZV01000718    PIK45343.1    ABLF02041865    ACPB03002101    ACPB03002102    ACPB03002103    GBBI01004745    JAC13967.1    ACPB03019169    MRZV01000723    PIK45255.1    ABLF02008456    KQ980844    KYN12280.1    MRZV01000576    PIK47528.1    ABLF02010707    KV461054    OCA14957.1    ABLF02019772    GEZM01050997    GEZM01050995    JAV75219.1    GEZM01102055    GEZM01102054    GEZM01102053    GEZM01102051    JAV52011.1    KK122208    KFM82237.1    GEZM01079607    GEZM01079598    JAV62391.1    ACPB03023527    GEZM01043682    JAV78912.1    MRZV01000618    PIK46835.1    CM004469    OCT91956.1    GEZM01097791    JAV54106.1    HADY01023564    SBP62049.1    ABLF02041541    MRZV01000245    PIK54530.1    MRZV01000347    PIK51998.1    KQ982635    KYQ53341.1    GFPF01012437    MAA23583.1    ABLF02008619    GEZM01060849    JAV70854.1    GCES01137294    JAQ49028.1    KQ978837    KYN27997.1    GEZM01011167    JAV93615.1   

Proteomes

UP000230750    UP000265100    UP000261560    UP000265200    UP000265180    UP000001038    + More
UP000007819    UP000054359    UP000018467    UP000265080    UP000007151    UP000079169    UP000218220    UP000005207    UP000095301    UP000015103    UP000265160    UP000085678    UP000078492    UP000008143    UP000186698    UP000075809   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF00412   LIM
PF02209   VHP
PF17917   RT_RNaseH

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR001781   Znf_LIM       
IPR003128   Villin_headpiece       
IPR036886   Villin_headpiece_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR041373   RT_RNaseH       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF47050   SSF47050       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10     1.10.950.10    

ProteinModelPortal

A0A2G8L9H5   A0A3P8Q6C6   A0A3B3C9X5   A0A3P9HT22   A0A3P9M8I3   A0A3B3HLX7   + More
A0A2G8KKG5   X1WTY2   A0A1A8UGA0   A0A087U9K1   A0A3B1JKR1   A0A2S2N8I3   A0A3P8S414   A0A212FHD4   A0A2S2NL10   A0A1A8IVJ0   A0A1S4E819   A0A1Y1MUX5   A0A1A8D4P4   A0A146SN99   A0A1Y1M671   A0A146S5H9   A0A1S3DM59   A0A3B3I1S4   A0A3Q0J4U3   A0A3P9HXP1   A0A1Y1MCJ7   A0A069DY08   A0A069DZS8   A0A1Y1NN34   L7LWW6   A0A0A9Z4Y4   A0A1A8JBP0   A0A2A4K615   A0A1Y1LR12   J9M4C2   A0A3P8QAD1   A0A2G8LMB1   A0A146LC45   A0A146TAZ6   I3KX76   A0A3Q0J653   A0A1I8NEP4   A0A075EIL5   A0A1I8NEN3   A0A1I8NEQ0   A0A1I8NEP7   A0A1Y1NHV7   A0A2S2NI46   I3KYE2   A0A2G8KBJ0   X1XQZ7   T1I2W9   A0A023EY30   A0A3P9AYU2   T1IA98   A0A3P8RKT7   A0A2G8KB94   A0A1S3JEC7   A0A3P8PD24   A0A3Q0JLN5   A0A1S3DS68   A0A3P8RHF8   J9LNB8   A0A151IWV0   A0A3Q0J548   A0A1S3ICH8   A0A3Q0JFZ1   A0A2G8KHQ8   J9LDY4   A0A1B8XWD8   J9JQ26   A0A1Y1LNL5   A0A1Y1JV53   A0A087UXZ8   A0A1Y1KPK9   T1HVY1   A0A1Y1LZ99   A0A2G8KFU3   A0A1L8H7D0   A0A1Y1K454   A0A1S3HTD1   A0A3Q0JKH1   A0A1A8B469   J9LYD2   A0A2G8L310   A0A2G8KVE9   A0A151X058   A0A224Z9B6   A0A1S3DNR0   J9K926   A0A1Y1LB52   A0A1S3DM37   A0A1S3DH71   A0A146PYY4   A0A151JNU9   A0A1Y1NAD7  

PDB

2BL6     E-value=0.0371663,     Score=85

KEGG

692786    K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] | (RefSeq) GAPDH; glyceraldehyde-3-pho

PATHWAY

00010    Glycolysis / Gluconeogenesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)
01230    Biosynthesis of amino acids - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0015074   GO:0008270   GO:0004190   GO:0046872   GO:0007010   GO:0003779   GO:0005515   GO:0003700   GO:0005634   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

313

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.104

Exp number, first 60 AAs:

0.0965599999999999

Total prob of N-in:

0.05387

outside

1  -  313

 

 

Pi

230.308268

Theta

209.347594

Tajima's D

0.315212

CLR

0

CSRT

0.455227238638068

Interpretation

Uncertain