Gene

KWMTBOMO03402  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006378

Annotation

PREDICTED:_LIM_and_senescent_cell_antigen-like-containing_domain_protein_1_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr6(-):7025977-7032821      View in EpiBrowser

Full name

LIM domain-containing protein      

Location in the cell

Extracellular   Reliability : 2.892

CDS

ATGCCTGGCTTAGCTACGATGTCTCTTGATAATATGTATTGTACTCGCTGTGGGGATGGATTTGAGCCAAATGAGAAAATTGTGAACTCCAATGGAGAATTATGGCATACAAATTGTTTTGTTTGTGCCCAGTGCTTTCGCATGTTTCCTGATGGTGTCTTCTATGAATTTGAGGGACGAAAGTATTGTGAACAGGATTTCCAAGTTTTATTTGCACCATGCTGTGCAAAGTGTGGAGAGTTTGTGATTGGCCGCGTTATAAAGGCGATGAACTCTAATTGGCATCCGGCCTGCTTCCGATGTGAAGAGTGTAATGTAGAGCTTGCAGATGCCGGTTTTATCAAGCATGCTGGTCGAGCATTGTGCCATGTATGTAACGCGCGTATCAAAGCGGATGGGCTGCAGAACTACATGTGTCATAAGTGCCATGGAGTAATTGACGGAGAACCTTTACGTTATCGGGGAGAAGTTTACCATGGCTATCACTTTACCTGTGCTACCTGTGGAGTTGAGCTGGATCATACAGCCAGAGAAGTGAAAAATCGTCCTGGATATGCTGCAAATGATGTTAATAACCTCTTTTGTCTTCGTTGCCATGATAAAATGGGTATTCCAATCTGCGGTGCTTGCCGACGTCCCATCGAGGAGAGAATCGTTACTGCTCTCGGGAAACATTGGCATGTTGAGCATTTCGTTTGTGCCAAATGCGAGAAACCATTTCACGGCCATCGTCATTATGAAAAGAAAGGCTTGGCCTACTGCGAACAACATTATCACCAGTTGTTCGGCAATTTGTGCTACGTCTGTAATCAAGTTATCGCCGGCGACGTATTCACCGCATTGAACAAGGCTTGGTGCGTACATCATTTTGCGTGTTCCGTTTGCGATGCGCCGCTGAGCACGCGTAGCAAGTTCTACGAATACGACGAGAGGCCCGCCTGTAGACGCTGCTACGAGAAGTTCCCGGCTGAACTACGACGTCGGCTACGTCGGGCTCATCACTACACGGTCCGCCGTTAA

Protein

MPGLATMSLDNMYCTRCGDGFEPNEKIVNSNGELWHTNCFVCAQCFRMFPDGVFYEFEGRKYCEQDFQVLFAPCCAKCGEFVIGRVIKAMNSNWHPACFRCEECNVELADAGFIKHAGRALCHVCNARIKADGLQNYMCHKCHGVIDGEPLRYRGEVYHGYHFTCATCGVELDHTAREVKNRPGYAANDVNNLFCLRCHDKMGIPICGACRRPIEERIVTALGKHWHVEHFVCAKCEKPFHGHRHYEKKGLAYCEQHYHQLFGNLCYVCNQVIAGDVFTALNKAWCVHHFACSVCDAPLSTRSKFYEYDERPACRRCYEKFPAELRRRLRRAHHYTVRR

Uniprot

H9JA33   A0A2A4JWH8   A0A2A4JWR4   A0A194Q4J7   S4NNY0   A0A212FBM7   + More
A0A1L8DM22   A0A0L0C0S2   A0A1B6CUQ5   A0A1L8ED99   A0A1I8MM60   W8B8M5   A0A1L8DM49   A0A1L8EBA7   A0A1B6HH13   A0A1B6KK65   A0A1L8EDD4   A0A0K8VW25   A0A1I8Q9Q4   W8BIX4   A0A1I8MM68   W5JSI1   D3TNG5   A0A1B6JL19   B4M0J3   A0A0K8UUA4   A0A034VIY9   A0A182F8M2   A0A1I8MM66   A0A3B0K1T4   Q298R5   A0A1A9WHT7   A0A1W4VU65   A0A1I8Q9X5   A0A1B6LGV9   B4NJM1   A0A1W4VUY4   A0A3B0K4G7   I5ANW4   B4G4H3   B4PT55   B4HLK6   A0A2J7Q3W6   B4QYL2   B3M0N2   B3P4Y1   Q8INQ9   B4K9A3   A0A3B0K1M1   I5ANW3   B4JV53   A0A0K8VBL3   A0A034VJP5   A0A1I8Q9S1   A0A0R1E1M5   A0A0M4EU56   A0A0P9ATZ4   Q8INR0   A0A0Q9WPA1   A0A0Q9XB57   A0A1W4VHM6   A0A0Q9WH29   A0A0P8Y1W9   A0A0Q9X2B1   A0A067RL29   A0A232FFN3   A0A1W4XPV6   A0A0R1E654   Q9XYA7   A0A088A8B0   A0A182HJT1   A0A1Y1KZQ4   V5I9L6   A0A1D2NH58   A0A1Y1KUT6   A0A023ERF9   A0A182Y4H1   A0A182Q753   A0A182IKM4   A0A1B6MLP6   A0A084VI70   A0A182NKW1   A0A336LRX4   E2AAN3   A0A182R824   A0A1W4XET3   A0A2M4ARR9   A0A2M4AR70   A0A1W4XQ46   D6X4L7   A0A2M4CY60   A0A2M3ZAC2   A0A182VSB4   A0A3L8E1G7   A0A182MUK3   A0A0C9QJ29   A0A182PMX3   A0A0N1I9L7   A0A0L7RIM7   A0A2M4BTY7  

Pubmed

19121390    26354079    23622113    22118469    26108605    25315136    + More
24495485    20920257    23761445    20353571    17994087    25348373    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    24845553    28648823    9885243    28004739    27289101    24945155    25244985    24438588    20798317    18362917    19820115    30249741   

EMBL

BABH01009246    NWSH01000532    PCG75843.1    PCG75840.1    KQ459551    KPI99934.1    + More
GAIX01012089    JAA80471.1    AGBW02009294    OWR51142.1    GFDF01006680    JAV07404.1    JRES01001062    KNC25890.1    GEDC01020150    JAS17148.1    GFDG01002173    JAV16626.1    GAMC01017032    GAMC01017030    GAMC01017024    GAMC01017020    JAB89531.1    GFDF01006552    JAV07532.1    GFDG01002900    JAV15899.1    GECU01033777    JAS73929.1    GEBQ01028129    JAT11848.1    GFDG01002164    JAV16635.1    GDHF01009594    JAI42720.1    GAMC01017042    GAMC01017040    GAMC01017038    GAMC01017036    GAMC01017034    GAMC01017028    GAMC01017026    GAMC01017022    JAB89529.1    ADMH02000295    ETN67086.1    EZ422967    ADD19243.1    GECU01007849    JAS99857.1    CH940650    EDW68372.2    GDHF01022045    JAI30269.1    GAKP01017197    JAC41755.1    OUUW01000013    SPP88194.1    CM000070    EAL27890.2    GEBQ01017046    JAT22931.1    CH964272    EDW83945.1    SPP88193.1    EIM52649.1    CH479179    EDW24521.1    CM000160    EDW96516.1    CH480815    EDW43033.1    NEVH01018421    PNF23278.1    CM000364    EDX13770.1    CH902617    EDV44279.1    CH954181    EDV49925.1    AE014297    BT012325    AAN14316.1    AAS77450.1    CH933806    EDW15535.1    SPP88195.1    EIM52648.1    CH916374    EDV91373.1    GDHF01016051    GDHF01000657    JAI36263.1    JAI51657.1    GAKP01017199    GAKP01017198    GAKP01017196    JAC41753.1    KRK03179.1    CP012526    ALC46555.1    KPU80734.1    BT044500    AAN14315.1    ACH95274.1    KRF83815.1    KRG01607.1    KRF83816.1    KPU80735.1    KRG01609.1    KK852613    KDR20239.1    NNAY01000306    OXU29330.1    KRK03178.1    AF078907    AY060424    BT003779    AAD21873.1    AAF54235.1    AAL25463.1    AAO41460.1    APCN01002208    GEZM01073312    GEZM01073310    GEZM01073307    GEZM01073306    JAV65165.1    GALX01002720    JAB65746.1    LJIJ01000040    ODN04608.1    GEZM01073311    GEZM01073309    GEZM01073308    JAV65163.1    GAPW01002352    JAC11246.1    AXCN02000307    GEBQ01003111    JAT36866.1    ATLV01013301    KE524850    KFB37664.1    UFQT01000137    SSX20690.1    GL438137    EFN69483.1    GGFK01009967    MBW43288.1    GGFK01009966    MBW43287.1    KQ971380    EEZ97250.1    GGFL01006095    MBW70273.1    GGFM01004738    MBW25489.1    QOIP01000001    RLU26554.1    AXCM01001279    GBYB01003559    JAG73326.1    KQ460544    KPJ14103.1    KQ414584    KOC70679.1    GGFJ01007077    MBW56218.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037069    UP000095301    + More
UP000095300    UP000000673    UP000008792    UP000069272    UP000268350    UP000001819    UP000091820    UP000192221    UP000007798    UP000008744    UP000002282    UP000001292    UP000235965    UP000000304    UP000007801    UP000008711    UP000000803    UP000009192    UP000001070    UP000092553    UP000027135    UP000215335    UP000192223    UP000005203    UP000075840    UP000094527    UP000076408    UP000075886    UP000075880    UP000030765    UP000075884    UP000000311    UP000075900    UP000007266    UP000075920    UP000279307    UP000075883    UP000075885    UP000053240    UP000053825   

PRIDE

H9JA33    Q8INQ9    Q8INR0    Q9XYA7   

Pfam

PF00412   LIM

Interpro

IPR017351   PINCH        + More
IPR001781   Znf_LIM       
IPR006797   PRELI/MSF1_dom       

ProteinModelPortal

H9JA33   A0A2A4JWH8   A0A2A4JWR4   A0A194Q4J7   S4NNY0   A0A212FBM7   + More
A0A1L8DM22   A0A0L0C0S2   A0A1B6CUQ5   A0A1L8ED99   A0A1I8MM60   W8B8M5   A0A1L8DM49   A0A1L8EBA7   A0A1B6HH13   A0A1B6KK65   A0A1L8EDD4   A0A0K8VW25   A0A1I8Q9Q4   W8BIX4   A0A1I8MM68   W5JSI1   D3TNG5   A0A1B6JL19   B4M0J3   A0A0K8UUA4   A0A034VIY9   A0A182F8M2   A0A1I8MM66   A0A3B0K1T4   Q298R5   A0A1A9WHT7   A0A1W4VU65   A0A1I8Q9X5   A0A1B6LGV9   B4NJM1   A0A1W4VUY4   A0A3B0K4G7   I5ANW4   B4G4H3   B4PT55   B4HLK6   A0A2J7Q3W6   B4QYL2   B3M0N2   B3P4Y1   Q8INQ9   B4K9A3   A0A3B0K1M1   I5ANW3   B4JV53   A0A0K8VBL3   A0A034VJP5   A0A1I8Q9S1   A0A0R1E1M5   A0A0M4EU56   A0A0P9ATZ4   Q8INR0   A0A0Q9WPA1   A0A0Q9XB57   A0A1W4VHM6   A0A0Q9WH29   A0A0P8Y1W9   A0A0Q9X2B1   A0A067RL29   A0A232FFN3   A0A1W4XPV6   A0A0R1E654   Q9XYA7   A0A088A8B0   A0A182HJT1   A0A1Y1KZQ4   V5I9L6   A0A1D2NH58   A0A1Y1KUT6   A0A023ERF9   A0A182Y4H1   A0A182Q753   A0A182IKM4   A0A1B6MLP6   A0A084VI70   A0A182NKW1   A0A336LRX4   E2AAN3   A0A182R824   A0A1W4XET3   A0A2M4ARR9   A0A2M4AR70   A0A1W4XQ46   D6X4L7   A0A2M4CY60   A0A2M3ZAC2   A0A182VSB4   A0A3L8E1G7   A0A182MUK3   A0A0C9QJ29   A0A182PMX3   A0A0N1I9L7   A0A0L7RIM7   A0A2M4BTY7  

PDB

1U5S     E-value=7.69056e-25,     Score=281

KEGG

101742604    K23354 LIM and senescent cell antigen-like-containing domain protein 1/2 | (RefSeq) LIM and senescen

GO

GO:0046872   GO:0046329   GO:0008258   GO:0007475   GO:0007391   GO:0009880   GO:0005925   GO:0031252   GO:1900026   GO:0005911   GO:2001046   GO:0098609   GO:0045216   GO:0005737   GO:0008270   GO:0016021   GO:0005515   GO:0003700   GO:0005634   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR24210  

Length:

339

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01163

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.00703

outside

1  -  339

 

 

Pi

173.061185

Theta

169.983852

Tajima's D

0.289454

CLR

0.714939

CSRT

0.453827308634568

Interpretation

Uncertain