Silkworm Genome Informatics Database

Gene

KWMTBOMO03400

Pre Gene Modal

BGIBMGA006379

Annotation

DNA_polymerase_delta_subunit_3_[Papilio_xuthus]

Location

Bomo_Chr6(-):7013592-7015111 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.273

CDS

ATGGATGAAAATAAGTCAGAGAGCTTAAATTCTATAAAGAACATAATCTTAGATGAGCGGCGTTTAGTGACATACACATCCATTAGTAAAGAATTGTGCATTCATGTAAATAAGGCGAAAATATTTTTGAGAGAATTTGTTGATGAATTGAGAAAGAACAAGCCGAATGTTGGTCTTTCAGTCAGCTACATTATCTCGGGATCCTTAAAAAACAATAAACTTCTAACTATTCTTGTACTAGAAGAAGAATTAGTAAGCGTGAAAGACAAATTCAGTACAATATTCTTTGAGCATATTTATAGTGTATGCTACGGCCATTGTACAAGTATAGATAAATCAGCATTTATAGCTATAAACACCTTCGAAGATTATTTGTTATGTAAAGGTACAGTCAAAAACAATATTTGTTCAAAGAGATCTTATGAAGAAATAGGCACTTTAAAATTTAAGAGCCAGGAAGTACCCGAGAAAAATCTGAAAAACTCCATAAAGAAAGATTCGAAAAACAGTATTAAAGAAGAAAATCACAATACACAGAATGAAGTGAAAACTATTAAAGATCATGATAAGAAAACAGATCCTGTAAAATCTGAAATTCCATCACCAAAGTACAATTCTGTTACTAACAATAAATCTCTTGATAAAAAAAGTAATGGAAAGTCTAATGGGAATATAATGGGATTTTTATCAAAAACACCAAATGTTAAAATGGATATTAACAAGAAAGATAAGGGAGATATTGAAAACAAAACAAAAATAACAAAAAAATTTGATAGAGAAGAAACAAACATTGATGATAGCTCTAAAACCAATGGAACTGAAATTAAATTGACAGAGAAGAAGTCAGTAAATAGTATAATCGCACAAAAAAATGAAGCATCAACTCAAAAAAAAGACATCAAAGTGGAGAAAATAGATATTGAAGTTAAAGTAAGAAATAAAAAAACTAACCAGGGGAATTCTTTTGGAAAGAAACGCAAAAGAGTATTGCATGTTTCTGATAGTGATAGTGATTGTGAAAAATCAGATTCATTGGCAGATGAAATTACTTTGGAACGTGAATCTGAAGATGAAATTCCACCAACTCCATCAGCTACCATTGTTACCATAACACCTGGGCTTGTTAATGCAAAAAAGAGGAGAAAAATCATAGATAAAACTTATACAGATGAAGAAGGATTTATGTTAACCAAAAAAGAAGAAATTTATGAGAGTTGTTCAGATGATGAAGTGCATACAAAAGAGAATGTTGATATTAAAAAACAAGTCACCGTTGAAACCACTGCTCTGAAAAATGTGCCAATAAAGCAATCAAAAAAAAAGTCTTCTCCATCACAAAAACATAAACAACCAACCATGATGAACTTCTTTAAAAAAGTACCAAATTAA

Protein

MDENKSESLNSIKNIILDERRLVTYTSISKELCIHVNKAKIFLREFVDELRKNKPNVGLSVSYIISGSLKNNKLLTILVLEEELVSVKDKFSTIFFEHIYSVCYGHCTSIDKSAFIAINTFEDYLLCKGTVKNNICSKRSYEEIGTLKFKSQEVPEKNLKNSIKKDSKNSIKEENHNTQNEVKTIKDHDKKTDPVKSEIPSPKYNSVTNNKSLDKKSNGKSNGNIMGFLSKTPNVKMDINKKDKGDIENKTKITKKFDREETNIDDSSKTNGTEIKLTEKKSVNSIIAQKNEASTQKKDIKVEKIDIEVKVRNKKTNQGNSFGKKRKRVLHVSDSDSDCEKSDSLADEITLERESEDEIPPTPSATIVTITPGLVNAKKRRKIIDKTYTDEEGFMLTKKEEIYESCSDDEVHTKENVDIKKQVTVETTALKNVPIKQSKKKSSPSQKHKQPTMMNFFKKVPN

Uniprot

H9JA34 A0A0L7KYC2 A0A2A4JVJ8 A0A2H1VMM3 A0A212FBM2 A0A154NYU0 + More
A0A310SLR3 A0A139WM77 A0A139WM00 A0A026W4W2

Pubmed

19121390 26227816 22118469 18362917 19820115 24508170 + More

EMBL

BABH01009246 JTDY01004356 KOB68253.1 NWSH01000532 PCG75839.1 ODYU01003130 + More
SOQ41504.1 AGBW02009294 OWR51141.1 KQ434783 KZC04839.1 KQ759893 OAD62084.1 KQ971319 KYB28925.1 KYB28926.1 KK107419 EZA51073.1

Proteomes

UP000005204 UP000037510 UP000218220 UP000007151 UP000076502 UP000007266 + More
UP000053097

PRIDE

H9JA34

Pfam

PF09507 CDC27

Interpro

IPR019038 POLD3 + More
IPR041913 POLD3_sf

Gene 3D

1.10.10.1300

ProteinModelPortal

H9JA34 A0A0L7KYC2 A0A2A4JVJ8 A0A2H1VMM3 A0A212FBM2 A0A154NYU0 + More
A0A310SLR3 A0A139WM77 A0A139WM00 A0A026W4W2

PDB

3E0J E-value=1.10487e-05, Score=118

KEGG

101742226 K03504 DNA polymerase delta subunit 3 | (RefSeq) DNA polymerase delta subunit 3-like

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03410    Base excision repair - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)
03440    Homologous recombination - Bombyx mori (domestic silkworm)

GO

GO:0006260 GO:0005634 GO:0006297 GO:0043625 GO:0006271 GO:1904161 GO:0005515 GO:0003700 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384 GO:0003887

PANTHER

PTHR17598

Length:

462

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02493

Exp number, first 60 AAs:

0.00107

Total prob of N-in:

0.00594

outside

1 - 462

Pi

13.825338

Theta

15.715518

Tajima's D

-0.890687

CLR

1.815013

CSRT

0.156242187890605

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics