Gene

KWMTBOMO03399

Pre Gene Modal

BGIBMGA006496

Annotation

PREDICTED:_TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Amyelois_transitella]

Location

Bomo_Chr6(+):7002032-7011926      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.872

CDS

ATGTCATTAATAAAGAAGACAAGAAACGATGCAATTAAAGCTGCGGTGGCTTCTTATCTAGAAAGGCGAAACTATCCCGATACTGAATATTACGGTAACAATAACCCAAATTGCCAGAGTGCTGAGCAAATGGCAGTTTCCACTATTGTACAGTCTGAAGCAAGTCGTGCAAATTCTATCTTGTTTTCATGTATCAACAATGATTCCTCTCAATACGATATACAATACACCAGGTTAGTCAACTTTATAAAAGAAATAAGAATCGAGAAACTAAAAAATGAGCTTCTGGGATTGTTGAGCCCTTTGCTATGTCATCTTTATCTAGAGATGCTACGTGGGGAACACGGAGGTGCTGCACAAGTGTTTTTGAAACGACATTCAGCAACATTACCACAGAAAGATTTATCTTTCCATCAACCAATTGATGGGAATTTACCCTCTGCATTGTATAGGCCAAATAGTCTAGAGCAACTGTTTAATTCACTTCAAAATGGTACAATAGATAATGAAACCCCCGAAAAAGATTACATGAATCAAATACTTGATGATATTGGATCCATCTACACTTTACAGGACATTGAAACTAGACCATCCATTGCTGCATTCAGGTCATGTAAATATGATATTTACTTATCACAAGATGCTTTAAATATGTTGAAAGCATATTTAGCCAAACATGGACATGTATTATTAATACAAGTATTGCAAACATGGTTTCATATTGATATAAATAGTGATAATAATAAAAAAAATTCTGAAGACGAAGAAGAAATGGAGTCTGATATGACAGTTAATAGAAATTTTTCTGAAGAACGAGTCATAGAAGCAAACGACCTGTTTTCTAAATGTAATGGCCATGCTGAATATCAAACTGTTGATAAGGAGTTGCGTGATCTCCAAGATGCAATCAAAGGAGTTAGAGACTCAACGGCTCCATTAAAATTGTACAAAATATCAGCACCGGATACGCATTTAATATGTGCAAAAACAGATCCTAGCTGTAACATGCTGTGCGGTGGCTTCATTAATTCTGAAGTCAGAATCTGGGATCTTGGCCAAAACAATATGCAAAAAAGGATCAATCATAACATATCAAAAATTGAATTAGCTTGCAACATGCCACCAGAATCTTCAAACGATCATGATACATTACAAATTGGCGCCGGATTGCCCCTGAGAGGCCACTCAGGCCCAGTACAAGCTGTGACTATTATGCCCAGAGAAGAATTAATACTCTCAGCATCACACGATAACACAATGAGAGCTTGGAGACTGTCTGATTATTCATGTGCTGCAATTTACAGAGGACACAATTATCCTATATGGTGTATGGACATATCAAGAAGTGGCCTATTTATAGTAACGGGATCTCATGACAGAACAGCTAAGCTTTGGTCTTTGAATAGAACGTTCCCAGTGAGAGTGTTTGTCGGTCACATGTCTGATGTCACTTGTGTGAAGTTCCACCCGAACGAGTGTTACATAGCGTCTGGCGGCGCGGACCGCAGCGTGCGGCTGTGGAGCGTGTGCGACGGCCGGCTCGCACGCGTCCTGTGCGCACACCGCGCGCCGGTGCGGGCGCTCGCCTTCGCACCCAGCGGAGCCTACCTAGCCACTGCCGGAGACGATAAAAAAATTAAAGTGTGGGACTTAGCAGCAGGAACTTGCGTGCAAGAGTACAAAGGACACCATGGTAAAATAATGTCACTGGATTGGTCTTCGGTCGGAAAACCCAGCCTAACTAACAGAGTAATGGCAGAACCTAATGAATTATCAACGGAAAACTCTCTACTCTGTTCAGCAGGAATGGATGGAATTGTGAAAGTTTTTCATGATTGTCAGACTAAAAATAAGCCAACCTCGAGTCAAGATATTTTAACATCAACTTATAATACGAAATGCACCTATTTGGTGGATGTACAAGTGCATCCGGAATGGGTTGTTGCGATTGGAACCAAGCAATGA

Protein

MSLIKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRANSILFSCINNDSSQYDIQYTRLVNFIKEIRIEKLKNELLGLLSPLLCHLYLEMLRGEHGGAAQVFLKRHSATLPQKDLSFHQPIDGNLPSALYRPNSLEQLFNSLQNGTIDNETPEKDYMNQILDDIGSIYTLQDIETRPSIAAFRSCKYDIYLSQDALNMLKAYLAKHGHVLLIQVLQTWFHIDINSDNNKKNSEDEEEMESDMTVNRNFSEERVIEANDLFSKCNGHAEYQTVDKELRDLQDAIKGVRDSTAPLKLYKISAPDTHLICAKTDPSCNMLCGGFINSEVRIWDLGQNNMQKRINHNISKIELACNMPPESSNDHDTLQIGAGLPLRGHSGPVQAVTIMPREELILSASHDNTMRAWRLSDYSCAAIYRGHNYPIWCMDISRSGLFIVTGSHDRTAKLWSLNRTFPVRVFVGHMSDVTCVKFHPNECYIASGGADRSVRLWSVCDGRLARVLCAHRAPVRALAFAPSGAYLATAGDDKKIKVWDLAAGTCVQEYKGHHGKIMSLDWSSVGKPSLTNRVMAEPNELSTENSLLCSAGMDGIVKVFHDCQTKNKPTSSQDILTSTYNTKCTYLVDVQVHPEWVVAIGTKQ

Uniprot

A0A0N0PCM3   A0A2H1VL01   A0A2A4JUX2   A0A2A4JVX0   A0A212FBN0   H9JAF1   + More
A0A194Q320   A0A2J7PNX2   A0A067QRZ3   E0VPQ2   A0A1B6M6T8   A0A232FFU3   A0A1B6DIH6   A0A0C9R6A3   A0A3L8D867   A0A026WIS8   K7IYA5   A0A158NN42   A0A151J657   F4X1W0   A0A151WKT2   A0A0L7R830   E2BW42   E2A2U2   A0A195BB43   E9IDU0   A0A195FAC4   A0A195C2X4   A0A2J7PNU9   A0A2I4CRM3   A0A310SAF4   A0A3P8S4Y5   F1QIA7   A0A3B4ZYP7   A0A3P8VW69   A0A1A8SDI2   A0A1A8M4G6   A0A1A7YQB2   A0A1A8AV83   A0A1A8FS18   A0A1A8I9P4   Q6PGV3   A0A091UNW6   A0A1A8CZL3   H2SF11   Q6DE31   A0A3B4T610   A0A3P9IFX2   A0A3B4XWZ3   A0A3B3S904   A0A1S3AQG8   Q32NS1   A0A131Z1E1   A0A224Z1S4   A0A3P9LE43   U3I667   A0A3B3HTB1   A0A091L8S4   A0A0F8ASG4   A0A0F8CDY2   A0A2I0MUY5   T1J6X2   V8NTP9   A0A3P8Y1I9   A0A1V4JKN8   A0A0N8K2Y7   A0A091GRT6   A0A093SD50   A0A1S3PUM2   A0A1W4ZRP3   A0A091E759   A0A3B5QDC7   A0A087R6V8   A0A093C1C4   A0A1U7RML9   A0A093GW99   A0A3B4H5R0   A0A3P9BAP0   A0A093IHX6   A0A2I0TZE4   A0A093THY2   A0A087VMR2   A0A091JIJ6   A0A0A0AW15   A0A094K9L4   A0A091G7B1   A0A093PEU5   A0A094KPM5   A0A091PNY6   A0A091SDY0   A0A093I049   A0A218VAS9   A0A099YUS7   M7BA75   A0A3P8Q3L4   A0A091MCG8   U3JL60  

Pubmed

26354079    22118469    19121390    24845553    20566863    28648823    + More
30249741    24508170    20075255    21347285    21719571    20798317    21282665    23594743    24487278    21551351    27762356    17554307    29240929    26830274    28797301    23749191    25835551    23371554    24297900    25069045    23542700    25186727    23624526   

EMBL

KQ460544    KPJ14101.1    ODYU01003130    SOQ41503.1    NWSH01000532    PCG75837.1    + More
PCG75838.1    AGBW02009294    OWR51140.1    BABH01009245    BABH01009246    KQ459551    KPI99936.1    NEVH01023284    PNF18016.1    KK853094    KDR11498.1    DS235370    EEB15358.1    GEBQ01008331    JAT31646.1    NNAY01000306    OXU29328.1    GEDC01011795    JAS25503.1    GBYB01003525    JAG73292.1    QOIP01000011    RLU16687.1    KK107182    EZA55947.1    ADTU01021015    KQ979935    KYN18592.1    GL888553    EGI59569.1    KQ982993    KYQ48493.1    KQ414637    KOC66988.1    GL451091    EFN80074.1    GL436214    EFN72249.1    KQ976537    KYM81440.1    GL762535    EFZ21256.1    KQ981693    KYN37575.1    KQ978344    KYM94945.1    PNF18017.1    KQ766607    OAD53621.1    CU467834    HAEH01014752    HAEI01013136    SBS15605.1    HAEF01011099    SBR51663.1    HADW01005278    HADX01010136    SBP32368.1    HADY01019891    HAEJ01004564    SBP58376.1    HAEB01015034    HAEC01001729    SBQ61561.1    HAED01007586    HAEE01013842    SBQ93798.1    BC056820    AAH56820.1    KL409753    KFQ91615.1    HADZ01020120    SBP84061.1    BC077313    CM004474    AAH77313.1    OCT80007.1    BC108505    CM004475    AAI08506.1    OCT77964.1    GEDV01003945    JAP84612.1    GFPF01012621    MAA23767.1    ADON01077260    KK743240    KFP39391.1    KQ041256    KKF28987.1    KQ042248    KKF17080.1    AKCR02000002    PKK33492.1    JH431896    AZIM01001885    ETE65440.1    LSYS01006902    OPJ72756.1    JARO02000303    KPP79049.1    KL509185    KFO85879.1    KL671001    KFW80699.1    KK717998    KFO53923.1    KL226149    KFM09212.1    KL237365    KFV09760.1    KL205735    KFV73666.1    KK594523    KFW02325.1    KZ506558    PKU39149.1    KL439954    KFW93929.1    KL499056    KFO13904.1    KK502085    KFP20402.1    KL873332    KGL98156.1    KL340286    KFZ52461.1    KL447787    KFO77059.1    KL225298    KFW70737.1    KL264298    KFZ61168.1    KK676138    KFQ09018.1    KK469313    KFQ56558.1    KK401265    KFV60078.1    MUZQ01000016    OWK63137.1    KL885573    KGL73106.1    KB594214    EMP25132.1    KK823589    KFP71585.1    AGTO01021885   

Proteomes

UP000053240    UP000218220    UP000007151    UP000005204    UP000053268    UP000235965    + More
UP000027135    UP000009046    UP000215335    UP000279307    UP000053097    UP000002358    UP000005205    UP000078492    UP000007755    UP000075809    UP000053825    UP000008237    UP000000311    UP000078540    UP000078541    UP000078542    UP000192220    UP000265080    UP000000437    UP000261400    UP000265120    UP000053283    UP000005226    UP000186698    UP000261420    UP000265200    UP000261360    UP000261540    UP000079721    UP000265180    UP000016666    UP000001038    UP000053872    UP000265140    UP000190648    UP000034805    UP000053258    UP000087266    UP000192224    UP000052976    UP000002852    UP000053286    UP000189705    UP000053584    UP000261460    UP000265160    UP000053119    UP000053858    UP000053760    UP000054081    UP000197619    UP000053641    UP000031443    UP000265100    UP000016665   

PRIDE

H9JAF1   

Pfam

PF00400   WD40        + More
PF04494   TFIID_NTD2

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR007582   TFIID_NTD2       
IPR020472   G-protein_beta_WD-40_rep       
IPR017986   WD40_repeat_dom       
IPR037264   TFIID_NTD2_sf       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037826   TAF5L       
IPR001632   Gprotein_B       

SUPFAM

SSF160897   SSF160897        + More
SSF50978   SSF50978       

Gene 3D

1.25.40.500     2.130.10.10    

CDD

cd08044  TAF5_NTD2

ProteinModelPortal

A0A0N0PCM3   A0A2H1VL01   A0A2A4JUX2   A0A2A4JVX0   A0A212FBN0   H9JAF1   + More
A0A194Q320   A0A2J7PNX2   A0A067QRZ3   E0VPQ2   A0A1B6M6T8   A0A232FFU3   A0A1B6DIH6   A0A0C9R6A3   A0A3L8D867   A0A026WIS8   K7IYA5   A0A158NN42   A0A151J657   F4X1W0   A0A151WKT2   A0A0L7R830   E2BW42   E2A2U2   A0A195BB43   E9IDU0   A0A195FAC4   A0A195C2X4   A0A2J7PNU9   A0A2I4CRM3   A0A310SAF4   A0A3P8S4Y5   F1QIA7   A0A3B4ZYP7   A0A3P8VW69   A0A1A8SDI2   A0A1A8M4G6   A0A1A7YQB2   A0A1A8AV83   A0A1A8FS18   A0A1A8I9P4   Q6PGV3   A0A091UNW6   A0A1A8CZL3   H2SF11   Q6DE31   A0A3B4T610   A0A3P9IFX2   A0A3B4XWZ3   A0A3B3S904   A0A1S3AQG8   Q32NS1   A0A131Z1E1   A0A224Z1S4   A0A3P9LE43   U3I667   A0A3B3HTB1   A0A091L8S4   A0A0F8ASG4   A0A0F8CDY2   A0A2I0MUY5   T1J6X2   V8NTP9   A0A3P8Y1I9   A0A1V4JKN8   A0A0N8K2Y7   A0A091GRT6   A0A093SD50   A0A1S3PUM2   A0A1W4ZRP3   A0A091E759   A0A3B5QDC7   A0A087R6V8   A0A093C1C4   A0A1U7RML9   A0A093GW99   A0A3B4H5R0   A0A3P9BAP0   A0A093IHX6   A0A2I0TZE4   A0A093THY2   A0A087VMR2   A0A091JIJ6   A0A0A0AW15   A0A094K9L4   A0A091G7B1   A0A093PEU5   A0A094KPM5   A0A091PNY6   A0A091SDY0   A0A093I049   A0A218VAS9   A0A099YUS7   M7BA75   A0A3P8Q3L4   A0A091MCG8   U3JL60  

PDB

6F3T     E-value=4.03928e-56,     Score=554

KEGG

101743512    K03130 transcription initiation factor TFIID subunit 5 | (RefSeq) TAF5-like RNA polymerase II p300/C

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0030914   GO:0033276   GO:0004402   GO:0016021   GO:0016607   GO:0043966   GO:0003713   GO:0036464   GO:0003743   GO:0005515   GO:0019441   GO:0003700   GO:0005634   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR19879:SF6  

Length:

654

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06847

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00491

outside

1  -  654

 

 

Pi

257.913755

Theta

166.056482

Tajima's D

1.702716

CLR

0.059705

CSRT

0.830708464576771

Interpretation

Uncertain