Silkworm Genome Informatics Database

Gene

KWMTBOMO03397 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006495

Annotation

PREDICTED:_uncharacterized_protein_LOC106122488_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr6(+):6968732-6986751 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.657

CDS

ATGGAACCCATAGATCTAGAAACAAAAAAATGTTGTCCCAATTGCAGCCAACCTTATCAATTTCAAATACTTTCAACTATATCAAAGATCAACTTACCATTGTTCCTGGAATGTGGTCACACTGTTTGTGAAAATTGTATTAGAAACATTGTCAAGTTTCACGAACCGATTGAATGCAGGATATGCCAGAAATGTATGGAAATTGATTCATCTGAATCATGTCTACTGGTTCAAGAGAAATTTAAGTTTTTCAAAAAGTTCCCAGTTAACTTCCAGATGCTAGGTGAACTTGCTTTTCAATTAATTCAGATTCCTAGAAATTCCAAAAAAGATTCAAATGATGATGATTATTACATTGACCTCAAAACATTGATGAAAAGCACTGAAAATACCCAAGGACCATGCTTGGAATGCAAAAAAATGTCATCTAAAATTTGCCATCAATGTGCAACTATCCTGTGTGAGGCGTGCTTCAACAAAAGTCATAAAAATTTTGCAATTTTTAAAAATCACATGCTTCAAAATATAGAATCAATCTTAACAACAAACTGCTGCAATCTCCACAACGACAAACAACTTGATTACTACTGCAATGAATGCTCCAAACCAATATGCATAGATTGCTTGATGGTTGGCGGTGAAAAATCATGCAAAAATCATAACACTACATCCAAACAGGAAGTTAATGATAAGTTTATTGAGGAACTGGGTAACATTGCACCTAAGTTATATGAAACATTTAAACGACTCACAAAAACTGCTGTTGACATTGGAAACATACTCTACCACATTGAGAATGAAAACGAAGCAAATGAGTTAACACGAGCTTATTCCACAACAGAACAGCATTTTTCTAAACTGTGCTACGCAGTCCAGAAACACAAACAAGAGAATCTTGATATCATCAACAAATTAAAGTGCTCAGAAAAGGATTCACTAATGCAAGCTAAGACTGTCATCGCAACAGCAATAGAAAAAGCCAACAAAGTCTTGAATATGATTAATTTAACATCAGATCCGAAAAAACTTAAACATATGAATCTCTCTGTTATTTTTAATGAAGCCAAAGAAATAACTGAAGCCCCTTGGTACTTATCTCGGAGCGAAATTGGCAAAGAGCCATTGAAAGCTGTAGTGGATGAAGAGTTATGTGCTTTGGTTAATGACTTCCTACATCTGGACGGGAATGCAGAATTTGTTTATAAACTGCAACGCACTCAAGATCTCGGCGACAATATAGAAATACCACCGCCGCCTGATGCACCTGTGTTCCCACCAGAACTGCCTAAAGATGTTCGCGAACAAAACAAAGCTGTCACTGAAAGAGAGAAAGATAACCAAAGAACTTCAGGATTTTTTAAGCTTGCCCCCAAGTACCGTAATAAAAGCAATTCAGTAACTTCACTGAACTCTAACAGCAGTGATTCTTCTCATCAAAGCCTCTTCAATTACGCTGATCTCTACAAACCCATGCAGCCTGTATCACCATTTGTTGAAAGCCAACATCCAAAACAGCTTCGAGAAGGAACACAAGAACTTATCTACATAACGCATATAGTAGATCCGCATAATTTCTACGTTCAACGAGTGTGCCAACAAGCGATGGTAAAGGAAATGTTACGCGAGTTTCGTAACGCTAAGTCTTTGCCGAAACCGTCTCTAAATCATGTGGCAGAAGGAAAACTTTACTTGGCGTTCAACGAGGCTGATAAAATGTGGCAAAGATGTCGCGTCATCAGTATAGACAAGCGACATATGGAGAACCCGGTCTTTCACGTGTTCTGTATTGATTTCGGGAGCACGGAATCTGTTAAAATAGATAAATTAAGACTTCTTCCACCAGCAAGAGTTCAATCGCCGTATCCACTGGCCATCAATTGTTCCATTAGTAACTGTGAACCCAAGACAGGTGCTTGGACCAACCATGATGCTTATCTGATCCAACACATTGTTGATAATAAACAAGCAGTTATTCACATTCGTCGTGTTTGCTCAACTTCGAACTATACAGTTAAATTGGAGTGTGACGTCACAACATTCGAACATGGCGTCAGTATTGCGCACGCACTTGTATTCCACGACCGCGCTCGTATGCCAAATCCGAAATTACCGTACTTGCCTGTGGCCCAAGAAAACCCAAAACTCTTCATCAGCAACAATGATTTTAAATATAAAGCTATCGAAGAAGTAACCATTACGCATACCGTAAATCCAGACAAATTTTTCGTTAGAAAGCGTCATCTTCAAAAAACGTACGAGAATCTGTGCGAAGAAATGGATCAGGAGTATTGCGCGAACATAACTACTGAAACAATTTATTTGCCTGAAATTGGGATGGCGTGCGCGGTGCAGACGGAGCGCGGCGGGTGGGCGCGCGGCGTGGTGCGCGAGACGCCGGGGCGCGGGCGCGTGCGCGTGTGGCTGGCGGACTGCGGGCGCACGCACGTGCTGCATTACTCCGCGCTGCGGTACCTGCGCGACAAGTTCACTAAAGCGGCCGCTCTAGCGACTGAATGTCATTTAGCTGGCGTTACTCCGCTGCACAAAAAATGGAACACCGGCTCCGTGGCTCTGCTACAAAAATATGAGGATACATGGCTCGAGTTGCACGTACAAGATAATCGCAGTAAAGGTTCAATCGGTGTTACCTTATTCGACAAATCCGATCCTGACGATGTTGTCTGCATCAACAATTTAATGATTAAATACAAATTCGCCATTTCATTCGGATTATTTAAATTCAATACTAATGAAGCGGTAGAAGAACAAGTGATCACAAATAAAAATCCACTTGACGTGCAGCGTCCAAAGACAAAGCCACAAACAGAAAACATTAAAATCTTAAAAAGACAATGTTCCGTACAAGAAAAAGAAGAAGATTTGGAAGCGAAAGACAAAGGACCACTTCGATTAGAAGCGAAACTGTTATATTATAAATCGCCCTCCCTCATTTACGTGTCTCTGATACATCAGCAGAAGGCGTTCAACAAACTGTTTGAAAACATTCAAAAGTTTTATTCGAACAATAAATACCAAACTAAAGCTAAAGATTGGAACGTGGGCGACAGGTGTTGCACGCTTTGCATTCAGTCGCAAACATGGCGACGCGCTGTCATACTTGAAATCGAAGGAGATGCTGCGATCAAGTGCCATCTGTGTGGCGTTATCCCGGCTGTGGGAGACGAATGGCCTTCGCTTACCAAAGAGTATCTTGGCGATCTTCTGGAAGCGTATCAACGCATTTTTATTACTAAACTAGGCAACTTCAAGGACAAAAGTATGCCTGTTGAAATCTGGGTCTATCACACGACACAAGGAGGAGCTTTAGAGCCCAATCAATCTGAGTGGCGGTGTTTAAATAATAAGATTATTGACCAAGGATTAGCCATTCCAGATAAAACGCGAACGGTATCAAACTCTGACAATTCTCAGAGCTTAGACGAAATCTTGGCAATCTTCAACATCAGTGGTTCAGTTCGTGAATGGCTTCAATTAGAACCCCAAGAAAGTTTTTCGGAACCCAAAAAATCGGCTGAATGCCGCTCCGAAACATCAACTCCTGTTGACCAAGATGACAATGTCACCGTTACTAACTCTTCTAAAGTAGTATTTATATCTGATTGGCTACCACCTGAACCGTTGCCAAGCCATGAATTTACTGCTATGCCCACATACATCGATAATGACGGTGTCATATATTTACACGATGTATCTCAAAACGATACATTGGAACTTATTCAAAAAGCTCTTGATGTCCGTTTTAAGAAGCCAGATCATAAAGCTAAATATGCAAAGTGGAGCATCGGGGAGCCTTGTATAGCTCTTTTTTTCTTAGATAATCGCTTCTATAGGGGAAAGGTTCTGGAAGTCAATGAAGATAGCTCAACGTGTCTAATACATTATATCGACTATGGAAATGAAGAAATATGTTCGTTTGAAAATCTTCGAAAAAACATTGCCCTTCATGAGATTCCTGTACAAGCCCACAAATGTTTTCTGCATGGCATTAAACCAGTTGACAAACACTGGGATAGGAATGCCCTTGACTACATACATAAGTCAATTGTTGAGAAAGAATGTTACGTTAAAGTATGCGGAGAACCCGTTGAAGGCGTGATTCCCGTTGATTTGAAATACAATAAACTATGGATCAACAGTCATTTAGTAGATTTTGAGATGGCGGAATACGTAGATGGCTCAAAAGCAGTAATAAAAAGATTTGCTCCAAGTAAATTAAATGAAGACGTCGGTGACATAATTTTGGTTGAATCCGATGGGAGCCCTGATTACATTATTGAAAAAGAACCAAATAGCCCTGACCTGCTGGCTACATCAAAAGATTCATATGATGCACTTCAAGGAAAAGATTGGAATATGCTGATGGAAGAAGAAGAGATCGACGAAGATATCATTATTACTTTCCCTAAAAACGAAATGGAAGAATTCAGATGTAATATTTCTTCTATTAACGATCCGAACATATTGGAACTTAGTATATTACACGATGATAAAACAACTTCGCAGTATAACCAATTATTTAGCTCGGTCCAGAGTGAAGGTGGTGACAGGCCACCATTAAATGGTATATACGAGAATAAAGCGTGTATCGCAATATTTCCAGAAGATAATTTGTGGTACCGAGCTTCTATACTACAATATAGTTCTACTCAAAATAGGATTAAAGTAAGGTTTGTAGATTACGGCAACATAGAAGTAATCTCCCCGGCAGATGTTAGAGAGATCAAAGATGAATGGGCAGAATTACCTCCTGTAACTATTTCGGCGAAATTATATAATGTTCAATTGAGTCCGGATGCAGAAATGAATTCGATTGTAAAAGTATACACTGATGTCTTATTAGATAAAGGTCCTTTTCATACTAAAATTATTGAATACGAAAACGACATTCCTTGCGTAGAATTACGAAATGATAATAATGTCTTGATAAACAAAATGCTTACAAAAAATACCGCATTCCTTGAGGCATCTGCCTTTAGCGACAACTAA

Protein

MEPIDLETKKCCPNCSQPYQFQILSTISKINLPLFLECGHTVCENCIRNIVKFHEPIECRICQKCMEIDSSESCLLVQEKFKFFKKFPVNFQMLGELAFQLIQIPRNSKKDSNDDDYYIDLKTLMKSTENTQGPCLECKKMSSKICHQCATILCEACFNKSHKNFAIFKNHMLQNIESILTTNCCNLHNDKQLDYYCNECSKPICIDCLMVGGEKSCKNHNTTSKQEVNDKFIEELGNIAPKLYETFKRLTKTAVDIGNILYHIENENEANELTRAYSTTEQHFSKLCYAVQKHKQENLDIINKLKCSEKDSLMQAKTVIATAIEKANKVLNMINLTSDPKKLKHMNLSVIFNEAKEITEAPWYLSRSEIGKEPLKAVVDEELCALVNDFLHLDGNAEFVYKLQRTQDLGDNIEIPPPPDAPVFPPELPKDVREQNKAVTEREKDNQRTSGFFKLAPKYRNKSNSVTSLNSNSSDSSHQSLFNYADLYKPMQPVSPFVESQHPKQLREGTQELIYITHIVDPHNFYVQRVCQQAMVKEMLREFRNAKSLPKPSLNHVAEGKLYLAFNEADKMWQRCRVISIDKRHMENPVFHVFCIDFGSTESVKIDKLRLLPPARVQSPYPLAINCSISNCEPKTGAWTNHDAYLIQHIVDNKQAVIHIRRVCSTSNYTVKLECDVTTFEHGVSIAHALVFHDRARMPNPKLPYLPVAQENPKLFISNNDFKYKAIEEVTITHTVNPDKFFVRKRHLQKTYENLCEEMDQEYCANITTETIYLPEIGMACAVQTERGGWARGVVRETPGRGRVRVWLADCGRTHVLHYSALRYLRDKFTKAAALATECHLAGVTPLHKKWNTGSVALLQKYEDTWLELHVQDNRSKGSIGVTLFDKSDPDDVVCINNLMIKYKFAISFGLFKFNTNEAVEEQVITNKNPLDVQRPKTKPQTENIKILKRQCSVQEKEEDLEAKDKGPLRLEAKLLYYKSPSLIYVSLIHQQKAFNKLFENIQKFYSNNKYQTKAKDWNVGDRCCTLCIQSQTWRRAVILEIEGDAAIKCHLCGVIPAVGDEWPSLTKEYLGDLLEAYQRIFITKLGNFKDKSMPVEIWVYHTTQGGALEPNQSEWRCLNNKIIDQGLAIPDKTRTVSNSDNSQSLDEILAIFNISGSVREWLQLEPQESFSEPKKSAECRSETSTPVDQDDNVTVTNSSKVVFISDWLPPEPLPSHEFTAMPTYIDNDGVIYLHDVSQNDTLELIQKALDVRFKKPDHKAKYAKWSIGEPCIALFFLDNRFYRGKVLEVNEDSSTCLIHYIDYGNEEICSFENLRKNIALHEIPVQAHKCFLHGIKPVDKHWDRNALDYIHKSIVEKECYVKVCGEPVEGVIPVDLKYNKLWINSHLVDFEMAEYVDGSKAVIKRFAPSKLNEDVGDIILVESDGSPDYIIEKEPNSPDLLATSKDSYDALQGKDWNMLMEEEEIDEDIIITFPKNEMEEFRCNISSINDPNILELSILHDDKTTSQYNQLFSSVQSEGGDRPPLNGIYENKACIAIFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKLYNVQLSPDAEMNSIVKVYTDVLLDKGPFHTKIIEYENDIPCVELRNDNNVLINKMLTKNTAFLEASAFSDN

Uniprot

H9JAF0 A0A194Q4K1 A0A212FBP6 A0A2J7QZX2 A0A0A9WBW5 A0A0A9W3F7 + More
A0A0K8SV12 A0A023EWN6 A0A0N0BEF3 A0A0C9Q8P8 K1QC93 A0A1W4U7Q1

Pubmed

19121390 26354079 22118469 25401762 25474469 22992520 + More

EMBL

BABH01009243 KQ459551 KPI99939.1 AGBW02009294 OWR51137.1 NEVH01009067 + More
PNF34127.1 GBHO01041249 JAG02355.1 GBHO01041250 JAG02354.1 GBRD01008689 JAG57132.1 GBBI01004962 JAC13750.1 KQ435830 KOX71804.1 GBYB01010628 JAG80395.1 JH818724 EKC19071.1

Proteomes

UP000005204 UP000053268 UP000007151 UP000235965 UP000053105 UP000005408 + More
UP000192221

PRIDE

H9JAF0

Pfam

PF00567 TUDOR + More
PF00643 zf-B_box

Interpro

IPR002999   Tudor        + More
IPR035437   SNase_OB-fold_sf
IPR039117   RNF17
IPR000315   Znf_B-box
IPR017907   Znf_RING_CS
IPR013083   Znf_RING/FYVE/PHD
IPR001841   Znf_RING

Gene 3D

2.40.50.90 3.30.40.10

CDD

cd00021 BBOX

ProteinModelPortal

H9JAF0 A0A194Q4K1 A0A212FBP6 A0A2J7QZX2 A0A0A9WBW5 A0A0A9W3F7 + More
A0A0K8SV12 A0A023EWN6 A0A0N0BEF3 A0A0C9Q8P8 K1QC93 A0A1W4U7Q1

PDB

5M9N E-value=3.76687e-08, Score=144

KEGG

101743370 K18405 tudor domain-containing protein 1/4/6/7 | (RefSeq) RING finger protein 17

GO

GO:0008270 GO:0005622 GO:0005515 GO:0003700 GO:0005634 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

PANTHER

PTHR16442

Length:

1668

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00489

Exp number, first 60 AAs:

0.00142

Total prob of N-in:

0.00026

outside

1 - 1668

Pi

245.727548

Theta

167.220035

Tajima's D

1.351941

CLR

0.042206

CSRT

0.755012249387531

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics