Gene

KWMTBOMO03388

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(-):6832133-6834187      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.282 Nuclear   Reliability : 1.076

CDS

ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCATCGGATGCGTTACCACCCGTCACCCCGATAGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTTCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATTCGACGAGCTACCGCCCTATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTATCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTTTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAATAG

Protein

MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPIEVKDLIKDLRPRKASGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHSTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAK

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   A0A139WA11   D7EM17   V5GNJ2   A0A2S2Q352   A0A2S2QEE0   A0A2S2PR14   K7IN67   V5GNF3   A0A2H8U0H5   A0A0C9RJA4   J9KKL3   A0A1B6J5Z9   A0A3N5Z7I3   J9JS95   X1WXE6   J9KLB1   A0A224XF24   A0A023EYS8   X1WLB2   A0A2S2PWA8   J9LC21   A0A2S2RAN7   A0A2S2PPK8   Q07995   A0A2S2R9D4   A0A2J7QUJ9   A0A2J7Q2R1   X1WN18   J9KCZ4   A0A2S2PBB4   J9KC83   J9KEU4   X1WZH0   A0A2J7R7D0   A0A2J7RPU2   A0A2S2NGV8   J9KPF1   A0A2J7QFL0   A0A2J7RKP3   A0A2J7R2E1   A0A2S2NJB5   A0A2J7PU96   A0A2J7RS77   X1WNI2   A0A2J7RE85   A0A2J7Q0Q6   A0A2S2PA10   A0A232ENU1   A0A087U3K8   V9H092   A0A2J7R6U1   A0A224XB44   A0A2J7QR37   A0A023F700   A0A2J7QY69   A0A2J7PBY3   A0A2S2PEZ9  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    30086797    25474469    8387152    28648823    9061921   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    KQ973412    EFA12510.2    GALX01005299    JAB63167.1    GGMS01002955    MBY72158.1    GGMS01006359    MBY75562.1    GGMR01019198    MBY31817.1    GALX01005359    JAB63107.1    GFXV01007093    MBW18898.1    GBYB01008290    JAG78057.1    ABLF02029306    ABLF02029314    ABLF02060138    GECU01013097    JAS94609.1    RPOV01000134    RPJ78669.1    ABLF02028535    ABLF02028545    ABLF02016634    ABLF02040174    ABLF02040183    ABLF02055266    GFTR01008038    JAW08388.1    GBBI01004395    JAC14317.1    ABLF02042518    ABLF02057746    GGMS01000625    MBY69828.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMS01017914    MBY87117.1    GGMR01018716    MBY31335.1    S59870    AAB26437.2    GGMS01017365    MBY86568.1    NEVH01010546    PNF32261.1    NEVH01019080    PNF22876.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02008463    GGMR01014053    MBY26672.1    ABLF02033757    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02034467    NEVH01006736    PNF36716.1    NEVH01001355    PNF42855.1    GGMR01003407    MBY16026.1    ABLF02041767    NEVH01014858    PNF27387.1    NEVH01002716    PNF41415.1    NEVH01007838    PNF34986.1    GGMR01004661    MBY17280.1    NEVH01021205    PNF19912.1    NEVH01000280    PNF43672.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01005277    PNF39135.1    NEVH01019964    PNF22161.1    GGMR01013409    MBY26028.1    NNAY01003095    OXU19992.1    KK118005    KFM71947.1    L79944    AAB04627.1    NEVH01006754    PNF36554.1    GFTR01008262    JAW08164.1    NEVH01011985    PNF31054.1    GBBI01001699    JAC17013.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    GGMR01015412    MBY28031.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000235965    UP000215335    + More
UP000054359   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   A0A139WA11   D7EM17   V5GNJ2   A0A2S2Q352   A0A2S2QEE0   A0A2S2PR14   K7IN67   V5GNF3   A0A2H8U0H5   A0A0C9RJA4   J9KKL3   A0A1B6J5Z9   A0A3N5Z7I3   J9JS95   X1WXE6   J9KLB1   A0A224XF24   A0A023EYS8   X1WLB2   A0A2S2PWA8   J9LC21   A0A2S2RAN7   A0A2S2PPK8   Q07995   A0A2S2R9D4   A0A2J7QUJ9   A0A2J7Q2R1   X1WN18   J9KCZ4   A0A2S2PBB4   J9KC83   J9KEU4   X1WZH0   A0A2J7R7D0   A0A2J7RPU2   A0A2S2NGV8   J9KPF1   A0A2J7QFL0   A0A2J7RKP3   A0A2J7R2E1   A0A2S2NJB5   A0A2J7PU96   A0A2J7RS77   X1WNI2   A0A2J7RE85   A0A2J7Q0Q6   A0A2S2PA10   A0A232ENU1   A0A087U3K8   V9H092   A0A2J7R6U1   A0A224XB44   A0A2J7QR37   A0A023F700   A0A2J7QY69   A0A2J7PBY3   A0A2S2PEZ9  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519  

Length:

500

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.04051

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04468

outside

1  -  500

 

 

Pi

0.173544

Theta

0.160893

Tajima's D

0

CLR

135.165055

CSRT

0.227038648067597

Interpretation

Uncertain