SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03383
Annotation
PREDICTED:_uncharacterized_protein_LOC106137619_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 4.332
 

Sequence

CDS
ATGATCCATCTTGTAAAATTCTCTTGCCTCTTTCAGATTAGTTTCGGATTCGGTGCCAATGCAGGATTAGGCCCATCCTGTCTTGGTCCACTTAATGATAACAGTACAAAATCATTTTTACGCATACGGACTGATCCCGATAAATCACCATTCATTGGAATGGTAAAGAACATAGGTTGGGTTGTCTTCGGTGTTGACGTAATATTTTTGATATGCAGTGTTTTATTTTTGAGGAAGATTTTCAAGGGTGCTGATAAGAAAGCTGCTAAAACATTCATATATTCTGGTTTACTAGCTGTTTTTTTATCATTTGTTTATGGCTTGCTGTATGTTATGGCATGTTTATCAATTGGAGGAGCATTTCCTATTTTTGAATTTTTTTTTGCATTCGTAGACCTAATTGTTTGGATCTACTTTTTAATAGTGGTTAATTCCTACAGACGATTGCCTAACTGA
Protein
MIHLVKFSCLFQISFGFGANAGLGPSCLGPLNDNSTKSFLRIRTDPDKSPFIGMVKNIGWVVFGVDVIFLICSVLFLRKIFKGADKKAAKTFIYSGLLAVFLSFVYGLLYVMACLSIGGAFPIFEFFFAFVDLIVWIYFLIVVNSYRRLPN

Summary

Ontologies

Topology

SignalP
Position:   1 - 21,         Likelihood:  0.633275
 
 
Length:
151
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
82.4718
Exp number, first 60 AAs:
20.09299
Total prob of N-in:
0.77598
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  57
TMhelix
58  -  77
inside
78  -  96
TMhelix
97  -  119
outside
120  -  122
TMhelix
123  -  145
inside
146  -  151
 
 

Population Genetic Test Statistics

Pi
17.998527
Theta
20.742705
Tajima's D
0.203561
CLR
0.566755
CSRT
0.43582820858957
Interpretation
Uncertain
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