Gene

KWMTBOMO03381

Pre Gene Modal

BGIBMGA006384

Annotation

abdominal_B_isoform_RBL_[Bombyx_mori]

Location

Bomo_Chr6(-):6573190-6577867      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.551

CDS

ATGATGAACGGGGTCGGCGGCGCGCTCTACGAGGAGGCGCACGCGTCGCCGCCCGGTGGCTCACCCCCAGCAGCTCCTGCGGCCGCACCACCTTCGGCCTCCAGCGCCTCGCCCGCTTCAGTCGGCTCCAACCCACCACAACCGCCGTTGCACATTCCGGCTAAGCGCTACGAGCCCGAGCCCGGCGTCATCCGGCATGCTCAGCAGCCCTGGGGCTATCCTCCAGATGCTCCCGGCTCATTCGAACATCAGTACCCCAGCGCCCCTACATATTATAATTTACCTGTCGAAAGAGAGCGCAAGTCGACTCTCCCCTTTTGGCCAACCAGCAGTGGTGAATACAAACCATACGCTGATGGAGGCTGTCATCAGGGTTTCTCGCAGCCCTGCTGGAACTATCCGTATGGCACACCTAGAGGCGATCAACCTCTGCCCTACGTCAGCGGAGAAGAACGACGAGCTGCAGTCTCCGAGGCGTCCGGGTTCTCTCATGATGCATATGGTCTACGAAATTACGCACCAGAGTCAGTTTCTGGCGCACCGTATCCGCCACCAGGTTCTCTACCCGGTTCTCTGTCAATGTCGGTCGGAGTCGGGGTGGGGTGTGGATCCTCGAACCCTCTGGATTGGACTGGTCAAGTGACGGTGCGCAAAAAACGCAAACCATACTCGAAATTTCAAACTCTCGAACTGGAAAAGGAATTCCTTTTCAACGCAATAGACGAATGA

Protein

MMNGVGGALYEEAHASPPGGSPPAAPAAAPPSASSASPASVGSNPPQPPLHIPAKRYEPEPGVIRHAQQPWGYPPDAPGSFEHQYPSAPTYYNLPVERERKSTLPFWPTSSGEYKPYADGGCHQGFSQPCWNYPYGTPRGDQPLPYVSGEERRAAVSEASGFSHDAYGLRNYAPESVSGAPYPPPGSLPGSLSMSVGVGVGCGSSNPLDWTGQVTVRKKRKPYSKFQTLELEKEFLFNAIDE

Uniprot

B9ZZS7   B9ZZS8   A0A2H1VL22   A0A2A4JSK0   A0A0L7LHS9   A0A194Q313   + More
A0A0N1IEG1   A0A1Q1M8Y2   H9JA39   A0A224XSF5   E0VI18   A0A139WMT7   Q9NHB6   A0A2R7W7V4   A0A0A9YMH5   N6TLW2   U4UJ34   A0A1B6CEF2   A0A1Y1LAQ2   A0A059PB59   A0A059PBA2   A0A0M3MZ45   A0A067RHN3   A0A1B6MDF5   Q1A1Y3   A0A1Y1LC97   A0A0M9A761   A0A088AID8   Q1KY82   A0A154P7C9   E2B5X1   T1IST5   Q1A1Y4   A0A0C9PW24   A0A3L8DCK4   A0A2A3EJP3   Q9XZR3   A0A026W8B4   A0A087T6M5   K7J1B1   E2AHB3   A0A0K8VZ57   A0A0K8UPT8   A0A0K8VK32   U3UBU1   A0A3B0JQF7   B4NJG3   A0A1D2NBP1   I5AP43   B4G4I3   A0A1W4VV26   A0A034W194   A0A0A1XGN6   W8BHX8  

Pubmed

26227816    26354079    28111552    19121390    20566863    18362917    + More
19820115    25401762    26823975    23537049    28004739    24845553    16686635    16686636    20798317    30249741    10327654    24508170    20075255    17994087    27289101    15632085    25348373    25830018    24495485   

EMBL

AB461857    BAH30151.1    AB461858    BAH30152.1    ODYU01003142    SOQ41523.1    + More
NWSH01000693    PCG74746.1    JTDY01001019    KOB75113.1    KQ459551    KPI99947.1    KQ460544    KPJ14090.1    KU663673    AQM32555.1    BABH01009207    GFTR01005517    JAW10909.1    DS235181    EEB13024.1    KQ971312    KYB29151.1    AF227923    AAF36721.1    EEZ99247.1    KK854294    PTY14285.1    GBHO01012889    GDHC01005462    JAG30715.1    JAQ13167.1    APGK01030460    KB740773    ENN78973.1    KB632345    ERL93097.1    GEDC01028792    GEDC01025598    JAS08506.1    JAS11700.1    GEZM01062220    GEZM01062219    GEZM01062215    JAV69948.1    JQ952575    AGC12524.1    JQ952574    AGC12523.1    KM496286    AKM12294.1    KK852676    KDR18691.1    GEBQ01006021    JAT33956.1    DQ383821    ABD38146.1    GEZM01062217    GEZM01062216    GEZM01062213    JAV69950.1    KQ435720    KOX78625.1    DQ368691    ABD16214.1    KQ434820    KZC07030.1    GL445887    EFN88940.1    JH431446    DQ383820    ABD38145.1    GBYB01005693    JAG75460.1    QOIP01000010    RLU18061.1    KZ288222    PBC32033.1    AJ131397    CAB40807.1    KK107348    EZA52203.1    KK113668    KFM60764.1    GL439483    EFN67230.1    GDHF01008459    JAI43855.1    GDHF01023718    JAI28596.1    GDHF01013374    JAI38940.1    HE979845    CCK73379.1    OUUW01000007    SPP83183.1    CH964272    EDW83887.2    LJIJ01000100    ODN02667.1    CM000070    EIM52728.2    CH479179    EDW25154.1    GAKP01009626    JAC49326.1    GBXI01004212    JAD10080.1    GAMC01013704    JAB92851.1   

Proteomes

UP000218220    UP000037510    UP000053268    UP000053240    UP000005204    UP000009046    + More
UP000007266    UP000019118    UP000030742    UP000027135    UP000053105    UP000005203    UP000076502    UP000008237    UP000279307    UP000242457    UP000053097    UP000054359    UP000002358    UP000000311    UP000268350    UP000007798    UP000094527    UP000001819    UP000008744    UP000192221   

PRIDE

B9ZZS7    B9ZZS8    H9JA39   

Pfam

PF00046   Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom       
IPR020479   Homeobox_metazoa       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

B9ZZS7   B9ZZS8   A0A2H1VL22   A0A2A4JSK0   A0A0L7LHS9   A0A194Q313   + More
A0A0N1IEG1   A0A1Q1M8Y2   H9JA39   A0A224XSF5   E0VI18   A0A139WMT7   Q9NHB6   A0A2R7W7V4   A0A0A9YMH5   N6TLW2   U4UJ34   A0A1B6CEF2   A0A1Y1LAQ2   A0A059PB59   A0A059PBA2   A0A0M3MZ45   A0A067RHN3   A0A1B6MDF5   Q1A1Y3   A0A1Y1LC97   A0A0M9A761   A0A088AID8   Q1KY82   A0A154P7C9   E2B5X1   T1IST5   Q1A1Y4   A0A0C9PW24   A0A3L8DCK4   A0A2A3EJP3   Q9XZR3   A0A026W8B4   A0A087T6M5   K7J1B1   E2AHB3   A0A0K8VZ57   A0A0K8UPT8   A0A0K8VK32   U3UBU1   A0A3B0JQF7   B4NJG3   A0A1D2NBP1   I5AP43   B4G4I3   A0A1W4VV26   A0A034W194   A0A0A1XGN6   W8BHX8  

PDB

5ZJT     E-value=1.41119e-09,     Score=148

KEGG

100272172    K09300 homeobox protein abdominal-B and related proteins | (RefSeq) Abd-b; abdominal B

GO

GO:0005634   GO:0006355   GO:0043565   GO:0003677   GO:0016021   GO:0007385   GO:0007486   GO:0000980   GO:0061101   GO:0008584   GO:0009997   GO:0035224   GO:0008354   GO:0005704   GO:0045944   GO:0007621   GO:0045843   GO:0035225   GO:0048094   GO:0035261   GO:0003700   GO:0035277   GO:1902339   GO:0030539   GO:0007506   GO:0046693   GO:0035263  

Subcellular location

Nucleus  

Length:

242

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00923

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02034

outside

1  -  242

 

 

Pi

213.04618

Theta

208.149665

Tajima's D

0.101103

CLR

17.979366

CSRT

0.398430078496075

Interpretation

Uncertain