Silkworm Genome Informatics Database

Gene

KWMTBOMO03378

Pre Gene Modal

BGIBMGA014213

Annotation

hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]

Location

Bomo_Chr6(+):6440536-6441813 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.429

CDS

ATGATTCGAGACTACTTGTTAGCCCTTTCCGCAGTGACCAAATCAACGTCAATCCGCTTCATTTCTCGCATTTCCAACTCGAGAATCTGCGTGTACTTGGACTCAAAACAAACAGCTGACGAATTGGTTGACGTCATTAAAAACGTTAAAGTGAAAGACCACGTATTGGAGATTCGGCCGCTGATAACAAGAAACAAACGTATCGTTTTATCCAACGTTTGCCCCATAATTCCGCACGATATTTTAGAAGAAAAATTTAATGAAATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAACTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGCTTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGACAATTCAACTACTTCCAATGACACTACAGTCGAATCCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAATATGAAATAAACCAAAACTACCCCCCTACTGAAATTTCCAAACCACAAGTACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACCTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGCAATTGGTCTCTGGACGAAGAACTAAAGAACACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAAGTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGCTGGATCAGTCAGAAACACAACCTCACTTCCCACTCACCTTAGACCAGTTTATTAGTTTTTTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACGGATGATATCCCGGAACTAATTGATATGTGCACGTTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG

Protein

MIRDYLLALSAVTKSTSIRFISRISNSRICVYLDSKQTADELVDVIKNVKVKDHVLEIRPLITRNKRIVLSNVCPIIPHDILEEKFNEMGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCFVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQDNSTTSNDTTVESNKLPSQSLNSTINLEYEINQNYPPTEISKPQVPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKNTPKSLKKKKKTLDDRSEEQVWKDIKTELDQSETQPHFPLTLDQFISFLDNSRSKQNLQELIKDYTDDIPELIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Uniprot

H9JT23

Pubmed

19121390

EMBL

BABH01030666

Proteomes

UP000005204

PRIDE

H9JT23

Pfam

PF00098 zf-CCHC

Interpro

IPR001878 Znf_CCHC + More
IPR036875 Znf_CCHC_sf

SUPFAM

SSF57756 SSF57756

ProteinModelPortal

H9JT23

KEGG

102466386 no KO assigned | (RefSeq) Mir2835, bmo-mir-2835; microRNA 2835

GO

GO:0003676 GO:0008270 GO:0043565 GO:0003700 GO:0005634 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Length:

405

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01383

Exp number, first 60 AAs:

0.01148

Total prob of N-in:

0.00357

outside

1 - 405

Pi

10.68577

Theta

11.259031

Tajima's D

-0.672619

CLR

0.51173

CSRT

0.206839658017099

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree