Silkworm Genome Informatics Database

Gene

KWMTBOMO03376

Pre Gene Modal

BGIBMGA006386

Annotation

abdominal-A_transcript_variant_E_[Bombyx_mori]

Location

Bomo_Chr6(-):6294376-6295195 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.529

CDS

ATGCTCCCAAAATACCACCAGCAATTCCACCACCAGAATTTATTTGCCGGTGCCGGAGCGTCGCCTATAGAGGCGTCGCTGTCGTCTTCGCTGTCATCGTCGCTGTCTACCTCGCTGTCTAGTTCGCTGTCTGGCGGACTGGGTGCGGCAGCGCTGGGAGCAGGCTCACCGGGTGCCGGGAGCCCGCAGAGGTCTTCATCTTCATCGTCGGCGTCGCCGGGGGCGCCGGCGAGAATGTATCCGTACGTGTCGCATCACCAGCAGTTCGGAGGCTCAGTGCCGTTCTCGGCGGGCGGGGGACTGTCAGCAGCAGATGACAAGAGTTGTCGATACCCGACCGCCGTGGGTCCTGATCCGATGGTGAATTACGCTCTGGGTCAGCACAATGGGGGCGCAGCCGTGTCTGCTGCGTCGGCGAGCATGGCAGCAGCGGCTCAGTTTTACCACCAGGCAGCAGCTTCGGCGGCCTCCGCAGCTAACGCAGCTACCGCGGACGCCATGGGGGTGGCCTGCGCTCAGCCCTCAGCACAGACGCTCCCTGAAATCCCCAGATACCCGTGGATGTCCATCACTGGTAAATGCTTTACTTCTTGA

Protein

MLPKYHQQFHHQNLFAGAGASPIEASLSSSLSSSLSTSLSSSLSGGLGAAALGAGSPGAGSPQRSSSSSSASPGAPARMYPYVSHHQQFGGSVPFSAGGGLSAADDKSCRYPTAVGPDPMVNYALGQHNGGAAVSAASASMAAAAQFYHQAAASAASAANAATADAMGVACAQPSAQTLPEIPRYPWMSITGKCFTS

Uniprot

H9JA41 V9Z6R1 B0FYM1 B0FYM0 V9ZAV6 B2ZF19 + More
B9ZZT0 A0A2H1V6K3 A0A2A4K535 A0A1Q1M8X9 A0A2A4K4N3 A0A0L7LLP3 A0A3Q0JLE3

Pubmed

19121390 18364737 19320756 28111552 26227816

EMBL

BABH01009192 KF740856 AHE41131.1 EU365399 KF740851 KF740854 + More
ABY66347.1 AHE41126.1 AHE41129.1 EU365398 KF740850 KF740853 AB461859 ABY66346.1 AHE41125.1 AHE41128.1 BAH30153.1 KF740855 AHE41130.1 EU650404 ACD10794.1 KF740849 KF740852 AB461860 AHE41124.1 AHE41127.1 BAH30154.1 ODYU01000951 SOQ36480.1 NWSH01000150 PCG79028.1 KU663672 AQM32554.1 PCG79029.1 JTDY01000609 KOB76478.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000079169

PRIDE

H9JA41 V9Z6R1 B0FYM1 B0FYM0 V9ZAV6 B2ZF19 + More
B9ZZT0

Pfam

PF12407 Abdominal-A + More
PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR022132   Abdominal-A
IPR009057   Homeobox-like_sf
IPR020479   Homeobox_metazoa

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JA41 V9Z6R1 B0FYM1 B0FYM0 V9ZAV6 B2ZF19 + More
B9ZZT0 A0A2H1V6K3 A0A2A4K535 A0A1Q1M8X9 A0A2A4K4N3 A0A0L7LLP3 A0A3Q0JLE3

KEGG

100135424 K09311 Antp family, other | (RefSeq) abd-A, Bmabd-A; abdominal A

GO

GO:0043565 GO:0006355 GO:0005634 GO:0016021 GO:0003677

Subcellular location

Nucleus

Length:

197

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0914200000000001

Exp number, first 60 AAs:

0.03499

Total prob of N-in:

0.08086

outside

1 - 197

Pi

238.722268

Theta

214.838289

Tajima's D

0.331201

CLR

0

CSRT

0.466876656167192

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics