Gene

KWMTBOMO03375

Pre Gene Modal

BGIBMGA006388

Annotation

Homeobox_protein_abdominal-A-like_[Papilio_machaon]

Location

Bomo_Chr6(-):6247244-6294525      View in EpiBrowser

Full name

Homeobox protein abdominal-A homolog      

Location in the cell

Nuclear   Reliability : 2.954

CDS

ATGAAACTAAAGAAAGAACTCCGAGCCGTGAAAGAGATAAACGAACAGGCTCGCCGCGAAAGAGAGGAACAGGACAGAATGAAGCAGCAGCAACAAGAGAAGCAGGCCAAGCTGGAAGGCCAGCATCACGGACACCACGTCACACATCATCACGACCCGATGAAGATGCCTATCGATAAGGGCTCCAATGACCTACTCAAAGTGAACAAGGTCCCCACTGCAGAGGACTCGCCTCGATGTCGGTCGCTGGGTGGACAGGCTGGTGATGTGCTTTAA

Protein

MKLKKELRAVKEINEQARREREEQDRMKQQQQEKQAKLEGQHHGHHVTHHHDPMKMPIDKGSNDLLKVNKVPTAEDSPRCRSLGGQAGDVL

Similarity

Belongs to the Antp homeobox family.

Keywords

Alternative splicing   Developmental protein   DNA-binding   Homeobox   Nucleus  

Feature

chain  Homeobox protein abdominal-A homolog
splice variant  In isoform Abd-AI.

Uniprot

B0FYM0   V9Z6R1   B2ZF19   B9ZZT0   V9ZAV6   B0FYM1   + More
A0A1Q1M8X9   A0A0N1I9L0   H9JA43   A0A194Q4L1   A0A2A4K4N3   A0A2A4K535   A0A2H1V6Q2   Q25213   A0A0L7LM04   A0A212FGG7   M1VNP0   E2B5W6   Q07961-2   D6W912   Q07961  

Pubmed

18364737    19320756    28111552    26354079    19121390    7840822    + More
26227816    22118469    23493422    20798317    7900986    18362917    19820115   

EMBL

EU365398    KF740850    KF740853    AB461859    ABY66346.1    AHE41125.1    + More
AHE41128.1    BAH30153.1    KF740856    AHE41131.1    EU650404    ACD10794.1    KF740849    KF740852    AB461860    AHE41124.1    AHE41127.1    BAH30154.1    KF740855    AHE41130.1    EU365399    KF740851    KF740854    ABY66347.1    AHE41126.1    AHE41129.1    KU663672    AQM32554.1    KQ460544    KPJ14088.1    BABH01009189    KQ459551    KPI99949.1    NWSH01000150    PCG79029.1    PCG79028.1    ODYU01000951    SOQ36479.1    L41931    AAA68460.2    JTDY01000609    KOB76477.1    AGBW02008671    OWR52832.1    AB698919    BAM84188.1    GL445887    EFN88935.1    AF017415    AF017414    X72339    KQ971312    EEZ99248.1   

Proteomes

UP000053240    UP000005204    UP000053268    UP000218220    UP000037510    UP000007151    + More
UP000008237    UP000007266   

PRIDE

B0FYM0    V9Z6R1    B2ZF19    B9ZZT0    V9ZAV6    B0FYM1    + More
H9JA43   

Pfam

PF12407   Abdominal-A        + More
PF00046   Homeodomain

Interpro

IPR009057   Homeobox-like_sf        + More
IPR020479   Homeobox_metazoa       
IPR001356   Homeobox_dom       
IPR022132   Abdominal-A       
IPR017970   Homeobox_CS       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

B0FYM0   V9Z6R1   B2ZF19   B9ZZT0   V9ZAV6   B0FYM1   + More
A0A1Q1M8X9   A0A0N1I9L0   H9JA43   A0A194Q4L1   A0A2A4K4N3   A0A2A4K535   A0A2H1V6Q2   Q25213   A0A0L7LM04   A0A212FGG7   M1VNP0   E2B5W6   Q07961-2   D6W912   Q07961  

KEGG

100135424    K09311 Antp family, other | (RefSeq) abd-A, Bmabd-A; abdominal A

GO

GO:0043565   GO:0006355   GO:0005634   GO:0007275   GO:0000980   GO:0009952   GO:0000122  

Subcellular location

Nucleus  

Length:

91

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.43317

outside

1  -  91

 

 

Pi

213.392455

Theta

192.024604

Tajima's D

0.374622

CLR

0.164537

CSRT

0.472726363681816

Interpretation

Uncertain