Gene

KWMTBOMO03373

Pre Gene Modal

BGIBMGA006389

Annotation

homeobox_protein_[Bombyx_mori]

Location

Bomo_Chr6(-):6098588-6099265      View in EpiBrowser

Full name

Homeotic protein ultrabithorax      

Alternative Name

JcUbx

Location in the cell

Nuclear   Reliability : 2.617

CDS

ATGAACTCTTACTTCGAGCAGGGTGGTTTTTACGGGGCCCATGGAGTGCACCAGGGCGGCGGTGGTGGAGACCAGTACCGCGGCTTCCCTCTGGGCCTCACGTATGCACAGCCACACGCTTTGCACCAGCCTCGTCCTCAGGATTCACCGTACGACGCGTCTGTCGCGGCGGCCTGCAAGCTCTATGCTGGAGAGCAGCAATATCCTAAAGCAGATTGTTCAAAGCCAGGCGGTGAGCAGCAGAATGGCTATGGTGGGAAAGAAGCCTGGGGCTCAGGTCTGGGAGCACTAGTGAGGCCGGCAGCATGCACTCCTGAAGCTCGATACAGTGAGTCGTCAAGTCCTGGTAGAGCGCTTCCGTGGGGCAACCAGTGTGCACTTCCGGGATCAGCAGCATCAGCCGCGCAGCCAGTGCACCAGCAGCCTACTAACCACACTTTCTACCCTTGGATGGCCATAGCAGGTTAG

Protein

MNSYFEQGGFYGAHGVHQGGGGGDQYRGFPLGLTYAQPHALHQPRPQDSPYDASVAAACKLYAGEQQYPKADCSKPGGEQQNGYGGKEAWGSGLGALVRPAACTPEARYSESSSPGRALPWGNQCALPGSAASAAQPVHQQPTNHTFYPWMAIAG

Description

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Binds the consensus region 5'-TTAAT[GT][GA]-3'. This homeotic protein controls development of the cells in the posterior thoracic and first abdominal segments.

Similarity

Belongs to the Antp homeobox family.

Keywords

Activator   Developmental protein   DNA-binding   Homeobox   Nucleus   Repressor   Transcription   Transcription regulation  

Feature

chain  Homeotic protein ultrabithorax

Uniprot

B0FYL8   B0FYL9   H9JA44   A0A1Q1M903   A0A2H1X3P3   Q8T940   + More
A0A2A4K5T9   E3UKR1   A0A0L7L985   A0A0N1IG72   A0A0N1PIR6   A0A212FGF6   I3QII1   A0A0M3R7E5   A0A1B0REL6   A0A1L1Z8X2   K4G1Q1   F4ZM10   A0A0H5AW00   K4G293   K4G225   U4USL5   A0A2R7X5T8   A0A146M0S0   K4G2L8   K4G870   A0A146LCP4   A0A1B0CWG8   A0A1B0CD94   A0A026W807   Q8T939   A0A1Y1MKF5   A0A1B0DL85   E0VNR1   A0A2J7RRW0   A0A1B6LZ50   A0A3L8DAF5   A0A224XU97   A0A1W4XI30   A0A067QYG8   W0YLC5   W0YKE8   F8J2Y9   K4G290   T1H964   W0YJP9   F8J2Z5   F8J2Z7   F8J2Z6   F8J2Z2   F8J2Z1   A0A088AIE4   A0A2P8Y447   A0A1J1I4G0   F8J2Z0   O76758   F8J2Y0   D2K023   F8J2Y8   A0A151X2Y6   A0A1V1IGJ4   F4WN89   A0A158NAB8   A0A0M9A8G9   A0A2A3EK07   F8J2Z3   F8J2Y6   A0A0N8ECC0   A0A195DLY2   F8J2X3   F8J2Z4   O76759   A0A084VYS4   Q7PGA9   A0A151HZV5   K7SRR7   A0A182MPT0   A0A195EV30   F8J2X7   F8J2Y4   A0A154P5A0   F8J2X8   F8J2Y5   F8J2Y2   A0A182NN39   A0A182VPY8   E9IEZ1   A0A195CQB2   K7SRR9   K7T3U5   A0A0J7KUR8   F8J2Y7  

Pubmed

18364737    19908062    19121390    28111552    11859369    7840822    + More
26227816    26354079    22118469    24766229    23537049    26823975    24508170    18362917    19820115    28004739    20566863    30249741    24845553    24398075    29403074    21719571    21347285    12364791    14747013    17210077    24438588    21282665   

EMBL

EU365396    ABY66344.1    EU365397    AB505052    ABY66345.1    BAI67747.1    + More
BABH01009181    KU663671    AQM32553.1    ODYU01013173    SOQ59866.1    AY074760    AAL71873.1    NWSH01000150    PCG79030.1    PCG79031.1    HM449935    ADO33070.2    JTDY01002187    KOB71919.1    KQ460544    KPJ14087.1    KQ459551    LADI01012886    KPI99951.1    KPJ20743.1    AGBW02008671    OWR52831.1    JQ673485    AFK08968.1    KP245729    ALC76149.1    KM264379    AKE98359.1    KR869786    ALD49736.1    JN936869    AFM55061.1    HQ166178    AEB15973.1    LC010623    BAR93876.1    JN936870    AFM55062.1    JN936866    AFM55058.1    KB632345    ERL93095.1    KK857424    PTY27159.1    GDHC01006429    JAQ12200.1    JN936868    AFM55060.1    JN936867    AFM55059.1    GDHC01012591    JAQ06038.1    AJWK01032448    AJWK01007559    KK107348    EZA52195.1    AY074761    KQ971312    AAL71874.1    EEZ99249.1    GEZM01034571    JAV83727.1    AJVK01006611    DS235344    EEB15017.1    NEVH01000598    PNF43567.1    GEBQ01011093    JAT28884.1    QOIP01000010    RLU17490.1    GFTR01004344    JAW12082.1    KK853195    KDR09988.1    HG530310    CDI44537.1    HG530311    CDI44538.1    FJ851859    ADC35252.1    JN936865    AFM55057.1    ACPB03003917    ACPB03003918    ACPB03003919    ACPB03003920    ACPB03003921    ACPB03003922    ACPB03003923    ACPB03003924    ACPB03003925    ACPB03003926    HG530312    CDI44541.1    FJ851865    ADC35258.1    FJ851867    ADC35260.1    FJ851866    ADC35259.1    FJ851862    ADC35255.1    FJ851861    ADC35254.1    PYGN01000951    PSN39026.1    CVRI01000041    CRK95223.1    FJ851860    ADC35253.1    AF080562    AAC31942.1    FJ851850    ADC35243.1    GU169707    ACZ56139.1    FJ851858    ADC35251.1    KQ982578    KYQ54614.1    LT216435    CZQ42540.1    GL888235    EGI64358.1    ADTU01010164    ADTU01010165    ADTU01010166    ADTU01010167    KQ435720    KOX78616.1    KZ288222    PBC32030.1    FJ851863    ADC35256.1    FJ851856    ADC35249.1    GDIQ01040708    JAN54029.1    KQ980734    KYN13905.1    FJ851843    ADC35236.1    FJ851864    ADC35257.1    AF080563    AAAB01008850    AAC31943.1    EAA07259.2    ATLV01018430    ATLV01018431    ATLV01018432    ATLV01018433    ATLV01018434    ATLV01018435    ATLV01018436    ATLV01018437    KE525233    KFB43118.1    EAA45000.2    KQ976637    KYM78840.1    JQ409419    AFW04355.1    AXCM01000037    KQ981954    KYN32103.1    FJ851847    ADC35240.1    FJ851854    ADC35247.1    KQ434820    KZC07033.1    FJ851848    ADC35241.1    FJ851855    ADC35248.1    FJ851852    ADC35245.1    GL762758    EFZ20789.1    KQ977440    KYN02825.1    JQ409424    AFW04360.1    JQ409425    AFW04361.1    LBMM01002908    KMQ94197.1    FJ851857    ADC35250.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000030742    UP000092461    UP000053097    UP000007266    UP000092462    UP000009046    UP000235965    UP000279307    UP000192223    UP000027135    UP000015103    UP000005203    UP000245037    UP000183832    UP000075809    UP000007755    UP000005205    UP000053105    UP000242457    UP000078492    UP000007062    UP000030765    UP000078540    UP000075883    UP000078541    UP000076502    UP000075884    UP000075920    UP000078542    UP000036403   

PRIDE

B0FYL8    B0FYL9    H9JA44   

Pfam

PF00046   Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom       
IPR001827   Homeobox_Antennapedia_CS       
IPR020479   Homeobox_metazoa       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

B0FYL8   B0FYL9   H9JA44   A0A1Q1M903   A0A2H1X3P3   Q8T940   + More
A0A2A4K5T9   E3UKR1   A0A0L7L985   A0A0N1IG72   A0A0N1PIR6   A0A212FGF6   I3QII1   A0A0M3R7E5   A0A1B0REL6   A0A1L1Z8X2   K4G1Q1   F4ZM10   A0A0H5AW00   K4G293   K4G225   U4USL5   A0A2R7X5T8   A0A146M0S0   K4G2L8   K4G870   A0A146LCP4   A0A1B0CWG8   A0A1B0CD94   A0A026W807   Q8T939   A0A1Y1MKF5   A0A1B0DL85   E0VNR1   A0A2J7RRW0   A0A1B6LZ50   A0A3L8DAF5   A0A224XU97   A0A1W4XI30   A0A067QYG8   W0YLC5   W0YKE8   F8J2Y9   K4G290   T1H964   W0YJP9   F8J2Z5   F8J2Z7   F8J2Z6   F8J2Z2   F8J2Z1   A0A088AIE4   A0A2P8Y447   A0A1J1I4G0   F8J2Z0   O76758   F8J2Y0   D2K023   F8J2Y8   A0A151X2Y6   A0A1V1IGJ4   F4WN89   A0A158NAB8   A0A0M9A8G9   A0A2A3EK07   F8J2Z3   F8J2Y6   A0A0N8ECC0   A0A195DLY2   F8J2X3   F8J2Z4   O76759   A0A084VYS4   Q7PGA9   A0A151HZV5   K7SRR7   A0A182MPT0   A0A195EV30   F8J2X7   F8J2Y4   A0A154P5A0   F8J2X8   F8J2Y5   F8J2Y2   A0A182NN39   A0A182VPY8   E9IEZ1   A0A195CQB2   K7SRR9   K7T3U5   A0A0J7KUR8   F8J2Y7  

PDB

4UUT     E-value=0.0158395,     Score=84

KEGG

100135425    K09311 Antp family, other | (RefSeq) Ubx; ultrabithorax

GO

GO:0043565   GO:0005634   GO:0007275   GO:0003700   GO:0006355   GO:0003677   GO:0009952   GO:0000980   GO:0000122   GO:0016021  

Subcellular location

Nucleus  

Length:

155

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.05138

outside

1  -  155

 

 

Pi

160.323971

Theta

184.102323

Tajima's D

-0.413361

CLR

0

CSRT

0.264386780660967

Interpretation

Uncertain