Silkworm Genome Informatics Database

Gene

KWMTBOMO03371

Pre Gene Modal

BGIBMGA006393

Annotation

PREDICTED:_homeobox_protein_Hox-C5-like_[Bombyx_mori]

Location

Bomo_Chr6(-):5550376-5551207 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 3.492

CDS

ATGGGTGCCGCGGAGCCTTGTCAGGATACTATGACGAGGGTCCAAGCAGGCGGGGATAATGCGGATTATACTGAGAACAAAATGGCCGCTGCTCCCGAAGTGCAAGCATATTATCCTTGGATGAAAGGAGTCAGTGGGGATACTAAAAAGGAAGGTTCAAAAAGAACAAGACAGACTTACACCAGATTTCAAACACTAGAGTTGGAAAAAGAGTTTCACTTCAATAAATACTTATCTAGACGACGAAGGATCGAAGTGTCACATGCATTAGGATTGACAGAACGTCAAATCAAGATTTGGTTCCAGAATCGGAGAATGAAAGCGAAGAAAGACGGAAAACTTACCACTTCGCCGGAACCCTTCGCTTTAGATGATATCGGTGCTACGAAGTTAGGTAACAATGTATCTGAATACATAGATCCGCGGCAACAAATTGGTTTGCCAGAATATCCCAATTATCATGCCGGTTCGGTGCAACCAAATATAGGTCACATACCGGAAAATATGTCACATTGCATGATGCCGCCATATGGCGGAATGCTACCGAAGATGTGA

Protein

MGAAEPCQDTMTRVQAGGDNADYTENKMAAAPEVQAYYPWMKGVSGDTKKEGSKRTRQTYTRFQTLELEKEFHFNKYLSRRRRIEVSHALGLTERQIKIWFQNRRMKAKKDGKLTTSPEPFALDDIGATKLGNNVSEYIDPRQQIGLPEYPNYHAGSVQPNIGHIPENMSHCMMPPYGGMLPKM

Similarity

Belongs to the Antp homeobox family.

Uniprot

H9JA48 A0A2A4J5V1 A0A194Q3M3 A0A194R9J0 A0A2H1VCK6 A0A212FGH4 + More
A0A0L7LM82 A0A3M7R5Y4 A0A3B1IXW1 A0A1B0D7U3 A0A3B4AE77

Pubmed

19121390 26354079 22118469 26227816 30375419 25329095 + More
25463417

EMBL

BABH01009153 NWSH01003011 PCG67116.1 KQ459551 KPI99958.1 KQ460473 + More
KPJ14503.1 ODYU01001634 SOQ38132.1 AGBW02008671 OWR52828.1 JTDY01000612 KOB76469.1 REGN01004144 RNA18956.1 AJVK01027160

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151 UP000037510 + More
UP000276133 UP000018467 UP000092462 UP000261520

PRIDE

H9JA48

Pfam

PF00046 Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS
IPR000047   HTH_motif
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf
IPR017995   Homeobox_antennapedia
IPR001827   Homeobox_Antennapedia_CS

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JA48 A0A2A4J5V1 A0A194Q3M3 A0A194R9J0 A0A2H1VCK6 A0A212FGH4 + More
A0A0L7LM82 A0A3M7R5Y4 A0A3B1IXW1 A0A1B0D7U3 A0A3B4AE77

PDB

1FTZ E-value=1.28099e-24, Score=276

KEGG

101742512 K09311 Antp family, other | (RefSeq) homeobox protein Hox-C5-like

GO

GO:0006355 GO:0043565 GO:0005634 GO:0003700 GO:0007275 GO:0003677 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

184

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00036

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.12975

outside

1 - 184

Pi

290.439219

Theta

211.520876

Tajima's D

1.178165

CLR

0

CSRT

0.709114544272786

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics