Gene

KWMTBOMO03369

Pre Gene Modal

BGIBMGA006394

Annotation

PREDICTED:_homeotic_protein_Sex_combs_reduced-like_[Amyelois_transitella]

Location

Bomo_Chr6(-):5508904-5514137      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.158

CDS

ATGAACGACTTAAATTACAACGCCGGGATGAGCTCCTACCAGTTCGTCAACTCCCTGGCTTCGTGTTACGGGAACCAGGCTCCGGGTCGTACCGGGACACCGGTAGAACAAACAGGCCATCCCGGCTTGCCTACGCCGGGAGCGGACTATTACAATCCTAATGCGGCGGCATCAGCATATCCGAACGCATGCTACTCGCCACCGCAAGTCGGGCATCATTACCCGCAACATCCGTACGCGACGCCCGCATCGGGAGCCCATATGCAACCGCAGACGATGATAGATTATACTCAGCTACATCCACAAAGACTCGGGAGTACAGCTAGTCACATGCATCAACATTCTAATCCGAGTCCTGGGGCGTTGTCCCCAAATTTGATGTCCACCCCGCCCAGTCAAGCTACGGGAGCCAGTTGTAAATTTGCCGATTCTACATCGACAACAGGAGTGGCGTCGCCTCAAGATCTTTCTACTTCATCTGGGCCGGGAAGAACTTCACCAGGCTTCGGTAATGTTGGTGGTCCGAACCCTAGTGGAACCAACAGCACCAAATTAGGTCTTACCACTCCAATAGCGTCTCCCGTTGAGCACAAGGCTAATGTGAACCAAAATATTTCAAGCCCGGCATCTAGCACGTCGAGCAACGAAAGCAACGATGCAAATAACTCCAACTCAAACAACACCAAGAATTCCAAGTCTTCGGCTAACTCGCAAGCTAATCCTCCACAAATATATCCATGGATGAAGCGCGTGCATCTTGGACAAAGTAAGTGA

Protein

MNDLNYNAGMSSYQFVNSLASCYGNQAPGRTGTPVEQTGHPGLPTPGADYYNPNAAASAYPNACYSPPQVGHHYPQHPYATPASGAHMQPQTMIDYTQLHPQRLGSTASHMHQHSNPSPGALSPNLMSTPPSQATGASCKFADSTSTTGVASPQDLSTSSGPGRTSPGFGNVGGPNPSGTNSTKLGLTTPIASPVEHKANVNQNISSPASSTSSNESNDANNSNSNNTKNSKSSANSQANPPQIYPWMKRVHLGQSK

Similarity

Belongs to the Antp homeobox family.

Uniprot

Q9XZR4   H9JA49   A0A2A4IUC4   A0A1Q1M8Y1   A0A194Q4M1   A0A194RB58   + More
A0A2H1VBB5   A0A0L7LLN5   A0A212FBV0   A0A0T6BHA1   Q95NI6   N6T8P3   G4VXL8   A0A1Y1L9F7   Q7K405   Q9NHB7   Q95UA8   Q9BK04   C5IDU3   Q9GTP6   Q95PK4   A0A067QHZ0   K7J1B5  

Pubmed

9188752    19121390    28111552    26354079    26227816    22118469    + More
16849608    23537049    28004739    11231138    18362917    19820115    20618431    24845553    20075255   

EMBL

D83533    BAA76868.1    BABH01009150    BABH01009151    NWSH01007956    PCG62740.1    + More
KU663675    AQM32557.1    KQ459551    KPI99959.1    KQ460473    KPJ14505.1    ODYU01001634    SOQ38133.1    JTDY01000612    KOB76468.1    AGBW02009272    OWR51205.1    LJIG01000248    KRT86692.1    AH014194    AY055848    AAL23670.2    APGK01039776    KB740973    KB632345    ENN76594.1    ERL93091.1    HM632030    AEI91062.1    GEZM01063842    JAV68950.1    AH014193    AAL27022.2    AF227628    AH014190    AH014191    AY057859    AAF42868.1    AAL26542.2    AAL27023.2    AH014192    AY055844    AAL23667.2    AF321227    KQ971312    AAK16422.1    EEZ99252.1    FJ898369    ACR58763.1    AH009804    AAG13010.1    AH011121    AAL09697.1    KK853373    KDR08068.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000037510    UP000007151    + More
UP000019118    UP000030742    UP000007266    UP000027135    UP000002358   

PRIDE

Q9XZR4    H9JA49   

Pfam

PF00046   Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001827   Homeobox_Antennapedia_CS       
IPR001356   Homeobox_dom       
IPR017995   Homeobox_antennapedia       
IPR009057   Homeobox-like_sf       
IPR020479   Homeobox_metazoa       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

Q9XZR4   H9JA49   A0A2A4IUC4   A0A1Q1M8Y1   A0A194Q4M1   A0A194RB58   + More
A0A2H1VBB5   A0A0L7LLN5   A0A212FBV0   A0A0T6BHA1   Q95NI6   N6T8P3   G4VXL8   A0A1Y1L9F7   Q7K405   Q9NHB7   Q95UA8   Q9BK04   C5IDU3   Q9GTP6   Q95PK4   A0A067QHZ0   K7J1B5  

PDB

2R5Z     E-value=0.00259586,     Score=94

KEGG

692761    K09311 Antp family, other | (RefSeq) Scr; sex combs reduced homolog

GO

GO:0005634   GO:0003700   GO:0043565   GO:0007275   GO:0003677   GO:0001228   GO:0009952   GO:0033613   GO:0000977   GO:0006355   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Subcellular location

Nucleus  

Length:

257

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00132

Exp number, first 60 AAs:

0.00132

Total prob of N-in:

0.07364

outside

1  -  257

 

 

Pi

256.967983

Theta

189.610108

Tajima's D

1.179354

CLR

28.815611

CSRT

0.713364331783411

Interpretation

Possibly Positive selection