Silkworm Genome Informatics Database

Gene

KWMTBOMO03368

Pre Gene Modal

BGIBMGA006486

Annotation

transcription_factor_deformed_[Bombyx_mori]

Location

Bomo_Chr6(+):5369148-5388027 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.666

CDS

ATGAGCTCCTTCCTGATGAACGGCGGCTACCAACCGCAGCCGGACCCCAAATTCCCACCTTCCGAGGAATACAGCCAAGCGGACTACATACCACCAGGAGAATACTACCAACATCAGCATTTGCAATATGGCTATCAGCATCAGTATGCGCCGGTGCAGATTGGAACAAGCTATGGATACGGAGGTTACTACCATCCTCTTCCACAGCATCCACCTGTGGCACCACCTCCTAGACCTCCGGAGCCGTCGCATCCATCTGATGCTGACCATGGCTTTGCGTCATCGCATAATTCTGATGGCGCTCCAGGCTTGGCTGAGCTCGGTCTAAGGTTAGAAAGACATATTGAAGAAGCAGCACCCGCGGGAAGAAAGCTTCATGCTTTAGGCCGAGAAGGTTCTCCTTCTTCAGAGCTGGATGAAGAAAGATTATTATTAGACAGTCCGCCGGTGGAAGACGACGACTCCTCAATATGTTCAGATAATACTGACAGGGTTATTTATCCGTGGATGAAGAAGATACATGTCGCTGGAGCGTCAAATGGATCTTTCCAGCCCGGAATGGAGCCTAAACGTCAGCGTACAGCCTACACGCGACACCAAATATTAGAACTGGAAAAAGAATTTCACTACAACAGATACCTAACCAGAAGAAGAAGAATAGAAATAGCTCACACTCTAGTCCTATCAGAGAGACAAATCAAAATCTGGTTCCAGAATAGAAGAATGAAATGGAAGAAGGATAATAAGCTGCCGAACACCAAAAACGTTAGAAGAAAAACGAATCCAGCGGGAGTCACCACAACAACGGCTAAAGCCACACCAAAGAGTAGATCGAATAAGAATACGAATAATAACGATAAGAAGAAATCAAACAACAACGGTCGTCCGGATAGTATAGAAAACGTTACGGATAATATCATGAACGATTTGCATTGTGTTGGAGCACAGCAGAATTTATCTCACGACACGGCCATCAGTCCAATGTCCCACCCTGGAAGCATGAACCCAGGGCATATGACACCGCATCATCTGCACATGATGGGATTGCACGGCAACTTGGATCCGGGTATGGTCGCGAACCTTTCAGCACACGGGTCTCCTGTCAGCGCCACCGGATGCGGCACGGGCATCCCGAATCAGCCGGTCATCAAATCAGACTACGGTCTAACTGCCTTATAA

Protein

MSSFLMNGGYQPQPDPKFPPSEEYSQADYIPPGEYYQHQHLQYGYQHQYAPVQIGTSYGYGGYYHPLPQHPPVAPPPRPPEPSHPSDADHGFASSHNSDGAPGLAELGLRLERHIEEAAPAGRKLHALGREGSPSSELDEERLLLDSPPVEDDDSSICSDNTDRVIYPWMKKIHVAGASNGSFQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRRKTNPAGVTTTTAKATPKSRSNKNTNNNDKKKSNNNGRPDSIENVTDNIMNDLHCVGAQQNLSHDTAISPMSHPGSMNPGHMTPHHLHMMGLHGNLDPGMVANLSAHGSPVSATGCGTGIPNQPVIKSDYGLTAL

Similarity

Belongs to the Antp homeobox family.

Uniprot

Q9XZR5 A0A2H1V0V3 A0A060DCM3 A0A060DCN9 A0A212FN96 A0A060D6K7 + More
A0A194RA57 A0A194Q346 A0A060D2V0 A0A060DCM9 A0A060D2V4 A0A0M3WME3

Pubmed

9188752 25340822 22118469 26354079

EMBL

D83534 BAA76869.1 ODYU01000163 SOQ34468.1 KJ739624 AIB07881.1 + More
KJ739645 AIB07911.1 AGBW02006612 OWR55208.1 KJ739642 AIB07904.1 KQ460473 KPJ14507.1 KQ459551 KPI99961.1 KJ739626 AIB07883.1 KJ739633 AIB07891.1 KJ739630 AIB07888.1 KM496278 AKM12286.1

Proteomes

UP000007151 UP000053240 UP000053268

PRIDE

Q9XZR5

Pfam

PF00046 Homeodomain

Interpro

IPR001827   Homeobox_Antennapedia_CS        + More
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf
IPR017970   Homeobox_CS
IPR017995   Homeobox_antennapedia
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

Q9XZR5 A0A2H1V0V3 A0A060DCM3 A0A060DCN9 A0A212FN96 A0A060D6K7 + More
A0A194RA57 A0A194Q346 A0A060D2V0 A0A060DCM9 A0A060D2V4 A0A0M3WME3

PDB

2R5Z E-value=2.17157e-29, Score=321

KEGG

692762 K09304 homeobox protein HoxA/B/C/D4 | (RefSeq) Dfd; transcription factor deformed

GO

GO:0043565 GO:0005634 GO:0007275 GO:0003700 GO:0003677 GO:0006355 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

392

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00223

Exp number, first 60 AAs:

0.00028

Total prob of N-in:

0.00220

outside

1 - 392

Pi

27.309256

Theta

23.562765

Tajima's D

1.702898

CLR

0.353092

CSRT

0.838358082095895

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics