Silkworm Genome Informatics Database

Gene

KWMTBOMO03359

Pre Gene Modal

BGIBMGA006398

Annotation

special_homeobox_protein_7_[Bombyx_mori]

Location

Bomo_Chr6(-):5253588-5261027 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.136

CDS

ATGGAATCGTGGAAATACAATTTTTCAAATGTGTCTCAGTTCAATCCTAATGAAGTTCAGTGGAATCAAGAAATGAATACAAGCGACGGTGCGCCTCAAGTTCCTTCGACTTCATCTTACAATCATCAGGAACAGTCTAATCTAAGTTTTGCGATGCCGGAAAACCCCGTTATCAATAACACAGAAGCACAACACAAAAACTTCAAACTTCAGCCACCGAATCAACAGTCATGCTTTATTCGCAGCTCAAACGGAGCTAACGCGTACATTAACAACAGCATAAATGCACATATGAACATGTTAAATGTTCCGACATGGCCTAGACAAGGTACAGGTGTTCCGCGACTTGTGAATCCAGCACAAACATGGAACAACATTGCTGTAAACAAAGTTAACAATGGAGGCGCCAAAAAACCAAAGCGTGTGAGAACAGCATTCACTAGCAAACAAATGACGGAGCTAGAGCAAGAATACACTCTCACAAAATACCTGGACCGGGCACGTCGCTTGGAGCTGGCGGACATTTTACAGCTCAACGAGAGGACTATAAAAATATGGTTCCAGAATAGAAGAATGAAAGAGAAAAAGATTTTAACGGAGCACCTAGAAGAGTCTGAAGCAACCAGCACAACTGCTTCTTCACCAGACTTAGGCCCGCTTCCAATGTATCACAACAATACATTCAGTGACCTAATGCTTACTGAACAAAACCAACCAGCACAATATTCTTTGGTTGTGCCGATGCATGGACTACAAACGTTACTTCAACCTCAGACAGCAAATGGAATCGGTGCCAGTTCAACAGGAGCTCCCGGGACAGAGCTCCAACAATTAACATTACAAGAGTTTGAGGTTAATCAGCCTACTGGAAGTTCAATGCAAGCGAGCACACCACCCGTGCCGAATTCCAATAACATGACGTGGGACTCATCCTGGATTCACAGTATGAACACCGAGATTCAAGCGACTCGGCGCGACGATGCGCCGCAAGAACCTTCGAGTTCATCTTACAATCATCAGGAACAGTCTAATCAATTCTCTACGATACCTGCACCGGAAAACTCCATACCTAATAACATACAAGCACAACAACAAGCACACGAGAAGAACAACGCAAATGGCGCAAATGATGTTATACCTCATGATCTACAAGTCAGCAACACGAATGATGCAAATAGCCTCCGAGAGCAAATGGAATCGTGTAAATACAATTTTACGGATTTGCCTCAATTTAATCGTATCGAAGTTCAATGGAATCAAGAAATGAGTTCAAGCGACAGTGTGCCGCAAGTGCCTTCGACTTCATCTTACAATCATCAGGAACAGTCTAATATAATCTCAGCGATGTCCGCACCGGAAAACTCCGTACTCAATAACACACAAGCAGAACACAAAAAGAACAATGCAAATGGCGCAAATGATTTTATACCTCATGATGTACAAGTCAGCAACACGAATGATGCAAATGGGTTATCAACTGCAGGCAGACGAGCATACGGCACACCTGATAGTGAGTGGTTACCGTCGCTCATGGACGTCAGCAATGCCAGGGGCAGAGCCAAGCCCCTGCCTATCGTTTAA

Protein

MESWKYNFSNVSQFNPNEVQWNQEMNTSDGAPQVPSTSSYNHQEQSNLSFAMPENPVINNTEAQHKNFKLQPPNQQSCFIRSSNGANAYINNSINAHMNMLNVPTWPRQGTGVPRLVNPAQTWNNIAVNKVNNGGAKKPKRVRTAFTSKQMTELEQEYTLTKYLDRARRLELADILQLNERTIKIWFQNRRMKEKKILTEHLEESEATSTTASSPDLGPLPMYHNNTFSDLMLTEQNQPAQYSLVVPMHGLQTLLQPQTANGIGASSTGAPGTELQQLTLQEFEVNQPTGSSMQASTPPVPNSNNMTWDSSWIHSMNTEIQATRRDDAPQEPSSSSYNHQEQSNQFSTIPAPENSIPNNIQAQQQAHEKNNANGANDVIPHDLQVSNTNDANSLREQMESCKYNFTDLPQFNRIEVQWNQEMSSSDSVPQVPSTSSYNHQEQSNIISAMSAPENSVLNNTQAEHKKNNANGANDFIPHDVQVSNTNDANGLSTAGRRAYGTPDSEWLPSLMDVSNARGRAKPLPIV

Uniprot

C0IMT2 H9JA53

Pubmed

19121390

EMBL

EU284707 ACA35260.1 BABH01009132

Proteomes

UP000005204

PRIDE

C0IMT2 H9JA53

Pfam

PF00046 Homeodomain

Interpro

IPR020479   Homeobox_metazoa        + More
IPR009057   Homeobox-like_sf
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

C0IMT2 H9JA53

PDB

1B72 E-value=5.55991e-14, Score=190

KEGG

101740881 no KO assigned | (RefSeq) homeobox protein Hox-D3-like

GO

GO:0005634 GO:0006355 GO:0043565 GO:0003677 GO:0008270 GO:0033177 GO:0000287 GO:0003723 GO:0006270 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

526

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00281

outside

1 - 526

Pi

289.784568

Theta

193.84806

Tajima's D

1.96007

CLR

1.432286

CSRT

0.874806259687016

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree