Gene

KWMTBOMO03358

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr6(+):5235588-5249245      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.426

CDS

ATGGCGCAAATGATTTTATATTTCATGATGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCCATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGCATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAACGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MAQMILYFMMSKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVHNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLNGRQRLGSAPGIAEVHGRR

Uniprot

Q5KTM5   Q6UV17   B9WPT5   A0A2H1WAR9   A0A2H1VFZ3   J9GT67   + More
T2M6M7   A0A2H1V2F4   A0A3D5S1K1   A0A1Y1S3P2   A0A0P4VXU0   A0A2H1VUV7   A0A2H1WY65   A0A2H1WCG9   A0A2H1W7F5   A0A2H1VQC3   A0A1E1XGQ7   A0A0C9SB62   A0A2G8JWN9   A0A1E1XVB3   W4Z5Z2   A0A147BJ69   W4XMI9   A0A131Y4D1   A0A1E1XPS6   A0A2G8KRG4   A0A147BU27   A0A1E1XGZ3   A0A1E1XN74   A0A1E1XNW6   A0A1E1X2R3   A0A091I8M3   A0A1E1X2P5   A0A131Y3W4   A0A091HUB5   A0A091HXV4   A0A091IJH5   W4YZP0   A0A091ILM0   A0A0K8RG16   A0A091IID5   A0A016UDM4   A0A3M0JRY7   A0A2I0UC10   A0A1E1XNL1   A0A091HT90   A0A1E1X2T1   A0A091I682   A0A2H9T4Q5   A0A091HWS9   A0A016UEC4   A0A091HLR5   A0A091IMH2   A0A091I7Q2   A0A091HT12   A0A091IFK3   A0A091IMF5   A0A091J2N9   A0A091IQ13   A0A091I6V6   K7EWV4   A0A023FCJ1   W4ZIH4   A0A091IPG8   A0A091HRH9   A0A091IJ27   K7EYK2   A0A3B3RE95   A0A091HQL6   A0A131Y4Q4   A0A091IBG0   K7EYG1   A0A091IEC1   V5HJ96   A0A131XQR9   K7EY85   W4ZK03   A0A147BLZ0   A0A091J849   A0A091IHY2   A0A147BRL4   A0A091HWW2  

Pubmed

23251564    24065732    30148503    28345194    28503490    26131772    + More
29023486    29209593    25730766    29150518    17381049    29240929    25765539    29652888   

EMBL

AB126052    BAD86652.1    AY359886    AAQ57129.1    FM995623    CAX36785.1    + More
ODYU01007424    SOQ50185.1    ODYU01002162    SOQ39302.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    ODYU01000366    SOQ35027.1    DPOC01000269    HCX22453.1    LWDP01000391    ORD92879.1    GDRN01105059    JAI57791.1    ODYU01004409    SOQ44252.1    ODYU01011959    SOQ58001.1    ODYU01007423    SOQ50184.1    ODYU01006795    SOQ48973.1    ODYU01003793    SOQ42997.1    GFAC01000919    JAT98269.1    GBZX01002173    JAG90567.1    MRZV01001153    PIK40187.1    GFAA01000199    JAU03236.1    AAGJ04079835    GEGO01004630    JAR90774.1    AAGJ04112043    GEFM01001453    JAP74343.1    GFAA01002385    JAU01050.1    MRZV01000414    PIK50568.1    GEGO01001118    JAR94286.1    GFAC01000877    JAT98311.1    GFAA01002657    JAU00778.1    GFAA01002479    JAU00956.1    GFAC01005670    JAT93518.1    KL218275    KFP03813.1    GFAC01005665    JAT93523.1    GEFM01001613    JAP74183.1    KL217824    KFO99526.1    KL217898    KFO99982.1    KL217887    KFO99825.1    AAGJ04095885    KL218790    KFP08260.1    GADI01003787    JAA70021.1    KL217819    KFO99425.1    JARK01001381    EYC12952.1    QRBI01000131    RMC03475.1    KZ505886    PKU43598.1    GFAA01002514    JAU00921.1    KL217820    KFO99518.1    GFAC01005646    JAT93542.1    KL218170    KFP02963.1    NSIT01000239    PJE78188.1    KL217834    KFO99597.1    EYC12953.1    KL217628    KFO97213.1    KL218794    KFP08560.1    KL218253    KFP03498.1    KFO99393.1    KL218510    KFP06135.1    KFP08540.1    KL218506    KL218617    KL218759    KFP03494.1    KFP06081.1    KFP07017.1    KFP07846.1    KL218043    KFP01746.1    KL218277    KFP03922.1    AGCU01000442    GBBK01004986    JAC19496.1    KL218031    KFP01551.1    KL217787    KFO98521.1    KL218648    KFP07340.1    AGCU01035999    KL217644    KFO97377.1    GEFM01002324    JAP73472.1    KL218469    KFP05572.1    AGCU01122093    KL217728    KFO98090.1    GANP01010920    JAB73548.1    GEFM01006417    JAP69379.1    AGCU01082246    AAGJ04028970    GEGO01003594    JAR91810.1    KL218761    KFP07876.1    KFO99295.1    GEGO01002025    JAR93379.1    KL217836    KFO99637.1   

Proteomes

UP000230750    UP000007110    UP000054308    UP000024635    UP000269221    UP000007267    + More
UP000261540   

PRIDE

Q5KTM5    Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF08159   NUC153
PF02182   SAD_SRA
PF00097   zf-C3HC4
PF16030   GD_N

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR013083   Znf_RING/FYVE/PHD       
IPR036987   SRA-YDG_sf       
IPR018957   Znf_C3HC4_RING-type       
IPR015947   PUA-like_sf       
IPR017907   Znf_RING_CS       
IPR001841   Znf_RING       
IPR003105   SRA_YDG       
IPR031986   GD_N       

SUPFAM

SSF56219   SSF56219        + More
SSF50978   SSF50978       
SSF88697   SSF88697       

Gene 3D

3.60.10.10     2.30.280.10     3.30.40.10    

ProteinModelPortal

Q5KTM5   Q6UV17   B9WPT5   A0A2H1WAR9   A0A2H1VFZ3   J9GT67   + More
T2M6M7   A0A2H1V2F4   A0A3D5S1K1   A0A1Y1S3P2   A0A0P4VXU0   A0A2H1VUV7   A0A2H1WY65   A0A2H1WCG9   A0A2H1W7F5   A0A2H1VQC3   A0A1E1XGQ7   A0A0C9SB62   A0A2G8JWN9   A0A1E1XVB3   W4Z5Z2   A0A147BJ69   W4XMI9   A0A131Y4D1   A0A1E1XPS6   A0A2G8KRG4   A0A147BU27   A0A1E1XGZ3   A0A1E1XN74   A0A1E1XNW6   A0A1E1X2R3   A0A091I8M3   A0A1E1X2P5   A0A131Y3W4   A0A091HUB5   A0A091HXV4   A0A091IJH5   W4YZP0   A0A091ILM0   A0A0K8RG16   A0A091IID5   A0A016UDM4   A0A3M0JRY7   A0A2I0UC10   A0A1E1XNL1   A0A091HT90   A0A1E1X2T1   A0A091I682   A0A2H9T4Q5   A0A091HWS9   A0A016UEC4   A0A091HLR5   A0A091IMH2   A0A091I7Q2   A0A091HT12   A0A091IFK3   A0A091IMF5   A0A091J2N9   A0A091IQ13   A0A091I6V6   K7EWV4   A0A023FCJ1   W4ZIH4   A0A091IPG8   A0A091HRH9   A0A091IJ27   K7EYK2   A0A3B3RE95   A0A091HQL6   A0A131Y4Q4   A0A091IBG0   K7EYG1   A0A091IEC1   V5HJ96   A0A131XQR9   K7EY85   W4ZK03   A0A147BLZ0   A0A091J849   A0A091IHY2   A0A147BRL4   A0A091HWW2  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0016021   GO:0005634   GO:0046872  

PANTHER

PTHR14927  

Subcellular location

Nucleus  

Length:

197

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00472999999999999

Exp number, first 60 AAs:

0.00459999999999999

Total prob of N-in:

0.05943

outside

1  -  197

 

 

Pi

341.620293

Theta

186.543895

Tajima's D

2.36353

CLR

0.526459

CSRT

0.930503474826259

Interpretation

Uncertain