SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03357
Pre Gene Modal
BGIBMGA006478
Annotation
special_homeobox_protein_1_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.623
 

Sequence

CDS
ATGGAATCGTGTAATTACAATTTTTCGAATTTGCCTCAGTTCAATCCTAACAAGATTCAGTGGAATCAAGAAATGAATACAAGCGACGGTGCGCCTCAAGTTCCTTCGACTTCATCTTACAATCATCAGGAACAGTCTGTGATGCCGGAAAACCCCGTTCTCACGAACGCAGAAGCACAACACAAAAACATCAGACTTCAGCCTCCGAATCAGCAGTCATGCTTTATTCGCGGCTCAAACGGAGCTAACGTATACATTAACAACAACACAAATCCATACATGAGTATGTTAAGTGCTCCGACATGGCCAACACAAGGTACAGGTGTTCCGCGACTTGTGAATCCAGCACAAACATGGAACAACATTGCTGTAAACAAAGTTAACAATGGAGGCGCCAAAAAACCAAAGCGTGTGAGAACAGCATTCACTAGCAACCAAATGACGGAACTAGAGCAAGAATACACTCGCACAAAGTACCTAGACCGGGCACGTCGCTTGGAGCTGGCGGAAATCTTACAGCTCAACGAGAGGACCATAAAAATATGGTTCCAGAACAGAAGAATGAAAGAGAAAAAGATTTTGACGGAGCGCTTAGGAGAGTCTGAAGAAACCAGCACGACTGCTTCTTCGCCAGATTTAGGCCCACTTCCAATATATCACAACTATACATTCAATAACCTAAGGTTTACTGAACGAAGTCAACCAGCACAACCTTATTCGATCATGCCGACCTATGGACATCAAACGTTACTTCAGCCTCCGACAGTAAATGGAATGGTTGCCAGTTCAACAGGAGCTCCCGGGACAGGGCTCCAACAACTAAAGTTACAGGATTTTGAGGTTAATCAGCCTATTGGAAATTCAATGCAAGCGAGCACACCGCCCATGCCGAATACCAATAATATGTCCTGGGACTTATCCTGGATTCACAGTATGAACACCCAATATGAATATTGA
Protein
MESCNYNFSNLPQFNPNKIQWNQEMNTSDGAPQVPSTSSYNHQEQSVMPENPVLTNAEAQHKNIRLQPPNQQSCFIRGSNGANVYINNNTNPYMSMLSAPTWPTQGTGVPRLVNPAQTWNNIAVNKVNNGGAKKPKRVRTAFTSNQMTELEQEYTRTKYLDRARRLELAEILQLNERTIKIWFQNRRMKEKKILTERLGESEETSTTASSPDLGPLPIYHNYTFNNLRFTERSQPAQPYSIMPTYGHQTLLQPPTVNGMVASSTGAPGTGLQQLKLQDFEVNQPIGNSMQASTPPMPNTNNMSWDLSWIHSMNTQYEY

Summary

Pfam
PF00046   Homeodomain
Interpro
IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom       
IPR020479   Homeobox_metazoa       
IPR009057   Homeobox-like_sf       
SUPFAM
SSF46689   SSF46689       
PDB
1B72     E-value=1.64765e-13,     Score=183

Ontologies

Topology

Subcellular location
Nucleus  
Length:
318
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00155
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04202
outside
1  -  318
 
 

Population Genetic Test Statistics

Pi
142.38748
Theta
144.067773
Tajima's D
0.145791
CLR
77.757804
CSRT
0.406379681015949
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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