Silkworm Genome Informatics Database

Gene

KWMTBOMO03355

Pre Gene Modal

BGIBMGA006399

Annotation

Hox_protein_pb_[Operophtera_brumata]

Location

Bomo_Chr6(-):5122560-5138512 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.01

CDS

ATGCAAGAGATATGCAACACAGCTGCCCTGCCGCTCGACACTAATCCACTCGTGCGCAAGATAAAATGCGAAGAATTTCCAACTATAAGAGGAAAACAGCCTACGAGAATTGGCATGGGGGTGCGCGATGAGATGGAAGAGGATTTCGCCGTGAAAGCAAGGAACACACCGCCAATCGGCCCCGTGCCCGGCCAGGAACACCCTCGGATAGAACACGGCGGCAACAGCTTCTGGTTGGCTGCGGTAACGGCTGCTGGAGCACCACATCCTATGCTCGAAACATGCACCGAAACTGGCTTCATAAACAGCCAACCTTCAATGGCCGAATTTATGACCGCCTTGCCTCAATTAGGGGCCGGAGAACTAAGCCCTCAGCACACGCCACCCGGATACGCACCGGATCTGCCATCTCCAGGAGGCGGCCTTAACGGACAAATGGCAAGCGCACAGAACAATGTGTGCGATCTGAATGATCCATCACCATCCGTCGAGGGTGCCTGTGGGAACGTGACCTCACCTGGTGTACCGATACATCATTTTACGTATCAAATACAAATTGCAATGAAGTATGATACACCTTGGGAGCATTTTAAAAGATCTAGTAAAGAGGCGTGA

Protein

MQEICNTAALPLDTNPLVRKIKCEEFPTIRGKQPTRIGMGVRDEMEEDFAVKARNTPPIGPVPGQEHPRIEHGGNSFWLAAVTAAGAPHPMLETCTETGFINSQPSMAEFMTALPQLGAGELSPQHTPPGYAPDLPSPGGGLNGQMASAQNNVCDLNDPSPSVEGACGNVTSPGVPIHHFTYQIQIAMKYDTPWEHFKRSSKEA

Similarity

Belongs to the Antp homeobox family.

Uniprot

H9JA54 A0A2H1VHK5 A0A2A4JE15 A0A0L7KS88 A0A060D6Z3 A0A212F1J7 + More
A0A1Q1M8X2 A0A060DBV2 A0A060D2W1 A0A194RF06 A0A194Q334 A0A060D6J2 A0A060D6Z9

Pubmed

19121390 26227816 25340822 22118469 28111552 26354079 + More

EMBL

BABH01009123 ODYU01002429 SOQ39902.1 NWSH01001882 PCG69804.1 JTDY01006498 + More
KOB65960.1 KJ739625 AIB07882.1 AGBW02010865 OWR47609.1 KU663677 AQM32559.1 KJ739643 AIB07905.1 KJ739639 AIB07898.1 KQ460473 KPJ14511.1 KQ459551 KPI99967.1 KJ739627 AIB07884.1 KJ739634 AIB07892.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000007151 UP000053240 UP000053268 + More

PRIDE

H9JA54

Pfam

PF00046 Homeodomain

Interpro

IPR001827   Homeobox_Antennapedia_CS        + More
IPR009057   Homeobox-like_sf
IPR020479   Homeobox_metazoa
IPR017970   Homeobox_CS
IPR001356   Homeobox_dom

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JA54 A0A2H1VHK5 A0A2A4JE15 A0A0L7KS88 A0A060D6Z3 A0A212F1J7 + More
A0A1Q1M8X2 A0A060DBV2 A0A060D2W1 A0A194RF06 A0A194Q334 A0A060D6J2 A0A060D6Z9

KEGG

101740380 K09302 homeobox protein HoxA/B2 | (RefSeq) homeotic protein proboscipedia

GO

GO:0003700 GO:0003677 GO:0007275 GO:0005634 GO:0043565

Subcellular location

Nucleus

Length:

204

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00805999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13691

outside

1 - 204

Pi

262.345033

Theta

177.626978

Tajima's D

1.911904

CLR

0.171467

CSRT

0.867306634668267

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics