Silkworm Genome Informatics Database

Gene

KWMTBOMO03353

Pre Gene Modal

BGIBMGA006400

Annotation

PREDICTED:_homeotic_protein_proboscipedia_[Bombyx_mori]

Location

Bomo_Chr6(-):5065819-5068392 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.032

CDS

ATGAAACACAAACGACAAACATTAAGCAAAAGCGAGGACGGCGATGACAAGGACTCCACTACGTCCGAAGGCGGGAAGAGCACGAAGGCAAGACTTGACAAATTTCTAGATGACGACGGACCACTTTCGGGCAAAAAAAGTTGTCAGGGCTGTGAATTGCCTGCGGGCGCTTTATGTTCTCCAGCAGAAGACCTACCGGAACTTACCTCTAGGACAAGAAATAATAACACACCTAGCGCAACCAACAATAATAGCTTTGGTAGCGACGGGGCCTCTAGTGTCACTTCGTCTTCTTCGCTCGATAAATTAGCAGAAGAAGATTCTCGTGATGACCCTACGCCGTCGATGGTAACTACAACAAGGAACTTAGCGAAGAGAATCAAGCAAGAAACTCGAAAGCGATCTCCTTCACTAGACGCCGTTGGATGTAAGGTGTCACCGTCATCGTCAAAAGATGGCCTCGGTACGGCGGCCGGTTTACCTGATGGTGCGAAATTCTCCTCAGTTAGTATAACGCCAGCATCAACACCAGGTACCCCATCGAGCATGCACCCCAGTCCAATAGGTCATTACCCTCGACCATCACCTCCGAACGCACCACCAGGCCCACCCCTTCCCCAAGCGGTACCGAACGCTATGCCGCCTTACGTCGTTAGGGGTAACGCACCCCCCGGTCAGTTTGTTACACATCCCGATTTCCGTATGGACTCCAAACAGTTTGTCGGAAAACTCTCACCTTATCCACAAAACAATAGAACCTACGAAAACTATGGACCCGGTCTGCAATCTGCTGACCAACACACTTACTCTAGAAACCAACAACATACGAGACAAGAGGGATCTGCATCTGCGAGATCCGCAAATGGCATAGGTTCTCGGCCGGCTTATCCCCACGAAATGTATCAAAATTACGGATATCCGACTTACGGTAAAGATCAAACGGGATACGGTCACGCCGCATACGATCACGGCCAATACGCCGGGGAACACATGACGTATGCGAATAGCCATGGCTACAGCTATCACTATCATGAGGGCACGCAACACGAACACCCGCATGGTTACTACGCTACAGAAGGTCAAAAAAATGCACACAGCAACGAGTACACAAAAAACGCTTACTATGATGCGAACGTCTACAGTAATCAACAAGCTCCGACTCCGAATGCGGTCTATGGACCAAATGCACCTCAGGGCAGTACGTCGGGAGAGCAATATGGAGGCGAGTGTAGTGATGGATATAGTTCCTTCCAACAATTTTATGAGGCGACTCATGCTACACCTGCTGGCGACAACTCAAACTCTTCCTCGGACTTCCACTTCTTGAGCAATCTCGCCAATGACTTCGCTCCAGAATATTATACCATTTGA

Protein

MKHKRQTLSKSEDGDDKDSTTSEGGKSTKARLDKFLDDDGPLSGKKSCQGCELPAGALCSPAEDLPELTSRTRNNNTPSATNNNSFGSDGASSVTSSSSLDKLAEEDSRDDPTPSMVTTTRNLAKRIKQETRKRSPSLDAVGCKVSPSSSKDGLGTAAGLPDGAKFSSVSITPASTPGTPSSMHPSPIGHYPRPSPPNAPPGPPLPQAVPNAMPPYVVRGNAPPGQFVTHPDFRMDSKQFVGKLSPYPQNNRTYENYGPGLQSADQHTYSRNQQHTRQEGSASARSANGIGSRPAYPHEMYQNYGYPTYGKDQTGYGHAAYDHGQYAGEHMTYANSHGYSYHYHEGTQHEHPHGYYATEGQKNAHSNEYTKNAYYDANVYSNQQAPTPNAVYGPNAPQGSTSGEQYGGECSDGYSSFQQFYEATHATPAGDNSNSSSDFHFLSNLANDFAPEYYTI

Similarity

Belongs to the Antp homeobox family.

Uniprot

H9JA55 A0A1Q1M8X2 A0A060DBV2 A0A2H1VGJ0 A0A060D2W1 A0A2A4JE15 + More
A0A060D6Z3 A0A0L7LCA3 A0A194RA62 A0A194Q3N4 A0A212F1J0 A0A060D6J2 A0A060D6J6 A0A1W4WPX6 Q9U6D6 Q95UR0 D6W944

Pubmed

19121390 28111552 25340822 26227816 26354079 22118469 + More
11252570 11901122 18362917 19820115

EMBL

BABH01009120 KU663677 AQM32559.1 KJ739643 AIB07905.1 ODYU01002429 + More
SOQ39901.1 KJ739639 AIB07898.1 NWSH01001882 PCG69804.1 KJ739625 AIB07882.1 JTDY01001806 KOB72831.1 KQ460473 KPJ14512.1 KQ459551 KPI99968.1 AGBW02010865 OWR47608.1 KJ739627 AIB07884.1 KJ739631 AIB07889.1 AF187069 AAF03889.1 AY043293 AAK96033.1 KQ971312 EEZ99256.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000053240 UP000053268 UP000007151 + More
UP000192223 UP000007266

PRIDE

H9JA55

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR009057   Homeobox-like_sf
IPR020479   Homeobox_metazoa
IPR001827   Homeobox_Antennapedia_CS

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JA55 A0A1Q1M8X2 A0A060DBV2 A0A2H1VGJ0 A0A060D2W1 A0A2A4JE15 + More
A0A060D6Z3 A0A0L7LCA3 A0A194RA62 A0A194Q3N4 A0A212F1J0 A0A060D6J2 A0A060D6J6 A0A1W4WPX6 Q9U6D6 Q95UR0 D6W944

KEGG

101740380 K09302 homeobox protein HoxA/B2 | (RefSeq) homeotic protein proboscipedia

GO

GO:0006355 GO:0043565 GO:0005634 GO:0007275 GO:0003700

Subcellular location

Nucleus

Length:

456

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02914

outside

1 - 456

Pi

169.954148

Theta

160.485161

Tajima's D

-0.229853

CLR

0.060526

CSRT

0.306734663266837

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics