Gene

KWMTBOMO03349  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006476

Annotation

protein_CREG1_precursor_[Papilio_xuthus]

Location

Bomo_Chr6(+):5026883-5038217      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.539

CDS

ATGAAGTGGGAATTAATAGCGTTTTCCTTGTGCTGCCTCAACTTATATGTAGACTGCGACTGGAAACATGATCGCCGTGGACATCAAAGGAGTTGGCAATCAAGAGACAGCGCAAATGAAATCACTTCACGGCGTAGATCCGATCCTCCTGACCACACTAAGCTCATAGCTATGGCACGATACGTGCTTCACAGTGCTGACTGGGCTTCGTTGGCTACGATTTCAAATCTACCAGCAATCGAAGGATTTCCCTTTACAAACGTGAAATCTGTCGTGGACGGATCTTTGGCGAACTCTACTGGAGTGCCATATTTTTATATGTCACCATTGGACTTCAGTGCCCGGGATTTAACAAAAAACAGTCGAGCTACTGTTCTCGTATCTTTAGAAGAAACCAAATTTTGTGATCAGAACAACTATGACCCTGAAGATCCACGTTGTACGAGACTGATGCTCTCCGGTAAAATGAAGAAGGTCAAGGAAGGCAGTGATGAGTACAAATTTGCTAAGGCCGCTTTATTCGAGAGGCATCCGGCAATGGCTAATTGGCCTACGGATCACGACTGGTTCATAGCCAAAATGAAAATTGCTCTAATAGCGATGGTCGATTGGTTCGGTGGAGCCAAATACATTCCAGTTCGCGACTACTTGGCATACAATTACACGGGCACCGAAATGCTTGAATATTATAATCATTTACAACATAAGCATGTAATCGTTTAA

Protein

MKWELIAFSLCCLNLYVDCDWKHDRRGHQRSWQSRDSANEITSRRRSDPPDHTKLIAMARYVLHSADWASLATISNLPAIEGFPFTNVKSVVDGSLANSTGVPYFYMSPLDFSARDLTKNSRATVLVSLEETKFCDQNNYDPEDPRCTRLMLSGKMKKVKEGSDEYKFAKAALFERHPAMANWPTDHDWFIAKMKIALIAMVDWFGGAKYIPVRDYLAYNYTGTEMLEYYNHLQHKHVIV

Similarity

Belongs to the CREG family.

Uniprot

H9JAD1   A0A2A4JEH9   A0A2H1W8S2   A0A1E1W779   I4DJ76   I4DR52   + More
S4NI04   A0A194RF11   A0A212FI22   D6WCL4   A0A026VU35   A0A0P4WDJ7   E2B7P0   A0A1D2N0N5   A0A1D2MJN5   V5I7U7   A0A0M9A9Q8   A0A2A3EEL2   E9G1H5   A0A182NL72   A0A3P8SAQ1   A0A0P5D9W8   A0A0P6F6R7   A0A182QT91   A0A0P5FD26   A0A3B3BXY3   A0A310SPC4   A0A3P9I011   A0A1Y1LR64   H2MA25   A0A3P9M4B3   C1BQB2   A0A1Q3FQ40   A0A182RHY9   A0A088AKM4   A0A1Q3FQA0   G3NET1   E0V9N3   A0A1Q3FQ91   A0A1Q3FQ49   A0A3B5AZK5   A0A3B4GEV0   A0A3P8NGB5   A0A3P9D6G4   A0A182YKA3   A0A3B4TSW1   A0A0L7QQE8   I3K9W7   A0A3B4WSS8   E2AK04   N6UL72   A0A154P2H7   A0A2U9C9U1   A0A0S7LBX3   B0WKF3   A0A023ENH8   I3K9W8   A0A3B3WQM6   A0A087YCP2   A0A3B3UUL4   A0A182LZ99   A0A3P9NT27   A0A3P9NT51   A0A195F8M7   A0A2M3Z3I0   T1DTW9   A0A182VQL1   A0A2M3ZKW5   B3RZ50   A0A2M3ZL07   A0A3B5MN21   A0A151WXM3   M4AAK2   W5JIS0   A0A182FAU8   A0A182KEB3   A0A2M4A4Y8   Q17A29   A0A1S4FAH0   A0A2M4A4X0   A0A1S4FAE9   Q17A30   K7E3V9   J3JU95   A0A0S7HT79   A0A2M4BW81   A0A3P8V295   A0A1W4XND9  

Pubmed

19121390    22651552    26354079    23622113    22118469    18362917    + More
19820115    24508170    30249741    20798317    27289101    21292972    29451363    17554307    28004739    20566863    25186727    25244985    23537049    24945155    18719581    23542700    20920257    23761445    17510324    17495919    22516182    24487278   

EMBL

BABH01009113    BABH01009114    BABH01009115    BABH01009116    NWSH01001882    PCG69813.1    + More
ODYU01006994    SOQ49346.1    GDQN01008245    GDQN01004964    GDQN01003662    JAT82809.1    JAT86090.1    JAT87392.1    AK401344    KQ459551    BAM17966.1    KPI99972.1    AK404946    BAM20392.1    GAIX01014219    JAA78341.1    KQ460473    KPJ14516.1    AGBW02008443    OWR53395.1    KQ971311    EEZ99047.1    KK107894    QOIP01000014    EZA47318.1    RLU15064.1    GDRN01097731    JAI59085.1    GL446193    EFN88318.1    LJIJ01000320    ODM98822.1    LJIJ01001044    ODM93209.1    GALX01005815    JAB62651.1    KQ435707    KOX80115.1    KZ288285    PBC29451.1    GL732529    EFX86814.1    GDIP01159133    JAJ64269.1    GDIQ01051984    JAN42753.1    AXCN02000080    GDIQ01259973    JAJ91751.1    KQ760551    OAD59853.1    GEZM01054624    JAV73517.1    BT076791    ACO11215.1    GFDL01005325    JAV29720.1    GFDL01005331    JAV29714.1    DS234995    EEB10102.1    GFDL01005308    JAV29737.1    GFDL01005315    JAV29730.1    KQ414792    KOC60746.1    AERX01029943    GL440135    EFN66214.1    APGK01012429    APGK01012430    APGK01012431    KB738732    ENN82490.1    KQ434787    KZC05320.1    CP026256    AWP13335.1    GBYX01176803    JAO87006.1    DS231971    EDS29772.1    GAPW01002636    JAC10962.1    AYCK01006166    AXCM01000344    KQ981727    KYN36798.1    GGFM01002325    MBW23076.1    GAMD01000689    JAB00902.1    GGFM01008433    MBW29184.1    DS985246    EDV23781.1    GGFM01008432    MBW29183.1    KQ982668    KYQ52517.1    ADMH02001283    ETN63188.1    GGFK01002479    MBW35800.1    CH477340    EAT43135.1    GGFK01002480    MBW35801.1    EAT43134.1    BT126808    AEE61770.1    GBYX01438801    GBYX01438800    GBYX01438799    GBYX01438798    JAO42554.1    JAO42557.1    GGFJ01008123    MBW57264.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000007266    + More
UP000053097    UP000279307    UP000008237    UP000094527    UP000053105    UP000242457    UP000000305    UP000075884    UP000265080    UP000075886    UP000261560    UP000265200    UP000001038    UP000265180    UP000075900    UP000005203    UP000007635    UP000009046    UP000261400    UP000261460    UP000265100    UP000265160    UP000076408    UP000261420    UP000053825    UP000005207    UP000261360    UP000000311    UP000019118    UP000076502    UP000246464    UP000002320    UP000261480    UP000028760    UP000261500    UP000075883    UP000242638    UP000078541    UP000075920    UP000009022    UP000261380    UP000075809    UP000002852    UP000000673    UP000069272    UP000075881    UP000008820    UP000002280    UP000265120    UP000192223   

PRIDE

H9JAD1    A0A088AKM4   

Pfam

PF14304   CSTF_C        + More
PF00076   RRM_1
PF14327   CSTF2_hinge

Interpro

IPR038192   CSTF2_C_sf        + More
IPR026896   CSTF_C       
IPR035979   RBD_domain_sf       
IPR033105   CSTF2       
IPR012349   Split_barrel_FMN-bd       
IPR025742   CSTF2_hinge       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR014631   CREG       
IPR029055   Ntn_hydrolases_N       

SUPFAM

SSF54928   SSF54928        + More
SSF56235   SSF56235       

Gene 3D

1.10.20.70     2.30.110.10     3.30.70.330    

ProteinModelPortal

H9JAD1   A0A2A4JEH9   A0A2H1W8S2   A0A1E1W779   I4DJ76   I4DR52   + More
S4NI04   A0A194RF11   A0A212FI22   D6WCL4   A0A026VU35   A0A0P4WDJ7   E2B7P0   A0A1D2N0N5   A0A1D2MJN5   V5I7U7   A0A0M9A9Q8   A0A2A3EEL2   E9G1H5   A0A182NL72   A0A3P8SAQ1   A0A0P5D9W8   A0A0P6F6R7   A0A182QT91   A0A0P5FD26   A0A3B3BXY3   A0A310SPC4   A0A3P9I011   A0A1Y1LR64   H2MA25   A0A3P9M4B3   C1BQB2   A0A1Q3FQ40   A0A182RHY9   A0A088AKM4   A0A1Q3FQA0   G3NET1   E0V9N3   A0A1Q3FQ91   A0A1Q3FQ49   A0A3B5AZK5   A0A3B4GEV0   A0A3P8NGB5   A0A3P9D6G4   A0A182YKA3   A0A3B4TSW1   A0A0L7QQE8   I3K9W7   A0A3B4WSS8   E2AK04   N6UL72   A0A154P2H7   A0A2U9C9U1   A0A0S7LBX3   B0WKF3   A0A023ENH8   I3K9W8   A0A3B3WQM6   A0A087YCP2   A0A3B3UUL4   A0A182LZ99   A0A3P9NT27   A0A3P9NT51   A0A195F8M7   A0A2M3Z3I0   T1DTW9   A0A182VQL1   A0A2M3ZKW5   B3RZ50   A0A2M3ZL07   A0A3B5MN21   A0A151WXM3   M4AAK2   W5JIS0   A0A182FAU8   A0A182KEB3   A0A2M4A4Y8   Q17A29   A0A1S4FAH0   A0A2M4A4X0   A0A1S4FAE9   Q17A30   K7E3V9   J3JU95   A0A0S7HT79   A0A2M4BW81   A0A3P8V295   A0A1W4XND9  

PDB

1XHN     E-value=1.41348e-39,     Score=407

KEGG

101740201    no KO assigned | (RefSeq) protein CREG1

GO

GO:0048037   GO:0003723   GO:0006378   GO:0005847   GO:0005615   GO:0016021   GO:0006355   GO:0005667   GO:0008134   GO:0010181   GO:0016491   GO:0003676   GO:0008270   GO:0033177   GO:0000287   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR45735:SF6  

SignalP

Position:   1 - 19,         Likelihood:  0.908905

 

 

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19678

Exp number, first 60 AAs:

0.00191

Total prob of N-in:

0.01796

outside

1  -  240

 

 

Pi

222.188449

Theta

155.310345

Tajima's D

1.747511

CLR

0.225554

CSRT

0.83890805459727

Interpretation

Uncertain