SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03348  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006476
Annotation
cleavage_stimulation_factor_64-kDa_subunit_[Bombyx_mori]
Location
Bomo_Chr6(+):5015793-5025141      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.398
 

Sequence

CDS
ATGGATAAAAGTAAAGAAAAAGAGGAACAAAGCATCATGGATAAATCCATGAGATCTGTTTTCGTGGGTAATATACCATACGAAGCCACAGAAGAGAAATTAAAGGACATATTCAGTGAAGTAGGACCCGTCTTGTCTTTCAAACTTGTCTTCGATCGCGAAACCGGTAAACCCAAAGGTTATGGGTTTTGTGAATATAAAGACCAGGAAACGGCTTTGAGTGCCATGAGAAATCTCAATGGATACGAAATTGGTGGTCGTTCGTTAAGAGTAGATAATGCTTGTACAGAGAAATCGCGAATGGAAATGCAAGCTCTAATGCAAGGACCTCAGGTAGAAAATCCTTATGGTGATCCAGTAGAACCTGAAAAAGCACCTGAAGCAATCAGTAAAGCTGTGGCGACATTGCCTCCAGAACAGATGTTTGAACTGATGAAGCAAATGAAACTTTGTATTCAGAATAATCCTAATGAAGCTCGAAACATGCTTTTACAAAATCCGCAACTGGCATACGCGCTGCTACAGGCACAGGTCATAATGAGAATTGTCGATCCAGCCACTGCAGTTACAATGCTTCATCCAAGTAACCCTGTACCTCCAATCTTACTACCGGGTGATAAACCAGCCCAAACGAATACTTATATACCATCCAATCCACCACCAGCACAACCACCGATACACAATAATCCCGGACCGCCACCCAACCAGTACAACAATTCCCGTCCGTCCATGGATGTTGATCTTCGCGGGTCGCGAGCTCCCGGTCCCGCGGCGCCCCCTAACGCCATGCCCGCGCTGCTCGACCAGGACATGCGCAGTCTGCCGCCGGTCGCCCCGCACCCGGTACCGCCGCCGATGCATCATCCCCAAGATCCTAGTTACCCGAGAGATCCGCGGTTGGCCAATGCTCCACCGTACAACCCGGATCCGAGGGTGCGTTCAAGCGATCCACGAAACCAGCAGAAACCGCCACAGCAAATGCCTCCTGGCATGCCGAGCGCTGCACAGGCTAGGAACATTCAAGGTATTCCATCGGGTGCTTCTGATCAAGAGAAGGCCGCGTTGATAATGCAAGTGCTGCAGTTATCCGACGAACAGATCGCTTTGTTACCGCCCGAACAACGCGCCAGTATACTCCTGCTGAAAGAACAAATCGCGAAGAGCACACAGCAGCGTTAG
Protein
MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAPEAISKAVATLPPEQMFELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQTNTYIPSNPPPAQPPIHNNPGPPPNQYNNSRPSMDVDLRGSRAPGPAAPPNAMPALLDQDMRSLPPVAPHPVPPPMHHPQDPSYPRDPRLANAPPYNPDPRVRSSDPRNQQKPPQQMPPGMPSAAQARNIQGIPSGASDQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKSTQQR

Summary

Uniprot
H9JAD1   A0A194RA68   A0A2H1VVG5   Q1HDZ6   D6X524   Q16HY2   + More
A0A182H873   A0A1I8PAL0   A0A1A9W2S9   A0A336M5S7   A0A336M704   A0A0L0BTM6   A0A1A9Y9E8   A0A1B0BGV4   A0A3B0K117   U5ENI5   A0A023EPQ6  
Pubmed
19121390    26354079    18362917    19820115    17510324    26483478    + More
26108605    24945155   
EMBL
BABH01009113    BABH01009114    BABH01009115    BABH01009116    KQ460473    KPJ14517.1    + More
ODYU01004378    SOQ44194.1    DQ497201    ABF55966.2    KQ971382    EEZ97191.2    CH478130    EAT33866.1    JXUM01087307    JXUM01117724    KQ566112    KQ563624    KXJ70390.1    KXJ73586.1    UFQT01000567    SSX25380.1    UFQS01000647    UFQT01000647    SSX05735.1    SSX26094.1    JRES01001362    JRES01000142    KNC23353.1    KNC33864.1    JXJN01014010    OUUW01000013    SPP87977.1    GANO01004064    JAB55807.1    GAPW01002101    JAC11497.1   
Proteomes
UP000005204    UP000053240    UP000007266    UP000008820    UP000069940    UP000249989    + More
UP000095300    UP000091820    UP000037069    UP000092443    UP000092460    UP000268350   
PRIDE
H9JAD1    Q1HDZ6   
Pfam
PF14304   CSTF_C        + More
PF00076   RRM_1
PF14327   CSTF2_hinge
Interpro
IPR038192   CSTF2_C_sf        + More
IPR026896   CSTF_C       
IPR035979   RBD_domain_sf       
IPR033105   CSTF2       
IPR012349   Split_barrel_FMN-bd       
IPR025742   CSTF2_hinge       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
SUPFAM
SSF54928   SSF54928       
Gene 3D
1.10.20.70     2.30.110.10     3.30.70.330    
ProteinModelPortal
H9JAD1   A0A194RA68   A0A2H1VVG5   Q1HDZ6   D6X524   Q16HY2   + More
A0A182H873   A0A1I8PAL0   A0A1A9W2S9   A0A336M5S7   A0A336M704   A0A0L0BTM6   A0A1A9Y9E8   A0A1B0BGV4   A0A3B0K117   U5ENI5   A0A023EPQ6  
PDB
1P1T     E-value=3.63334e-38,     Score=397

Ontologies

KEGG
733138    K14407 cleavage stimulation factor subunit 2 | (RefSeq) cleavage stimulation factor subunit 2 tau va
PATHWAY
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)
GO
GO:0048037   GO:0003723   GO:0006378   GO:0005847   GO:0098789   GO:0003729   GO:0031124   GO:0000166   GO:0003676   GO:0008270   GO:0033177   GO:0000287   GO:0006270   GO:0042555   GO:0048384  
PANTHER
PTHR45735:SF6  

Topology

Length:
392
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01248
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.04592
outside
1  -  392
 
 

Population Genetic Test Statistics

Pi
201.542476
Theta
165.883684
Tajima's D
0.586029
CLR
0.003406
CSRT
0.537073146342683
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 DNNIIIIPATAISR 100.00 0.001
26280517 SVEQQYEESQTR 100.00 0.001
28467696 SVFPENASNNEWAR 100.00 0.001
26280517 NIPQIK 100.00 0.005
28467696 NIQDAIHVAK 100.00 0.005
28556443 LPAALALAALHTR 100.00 0.005
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号