SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03346  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006475
Annotation
PREDICTED:_ras-related_C3_botulinum_toxin_substrate_1_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.376 Nuclear   Reliability : 1.603
 

Sequence

CDS
ATGTCTTCCGGAAGACCGATCAAGTGTGTGGTCGTTGGAGATGGTACCGTCGGAAAAACTTGTATGTTAATTTCATACACGACTGATAGCTTTCCAGGAGAATATGTGCCTACAGTTTTTGACAATTACTCGGCTCCAATGGTGGTGGATGGAGTGGCAGTATCTCTTGGTCTATGGGATACAGCGGGACAAGAAGACTACGACAGACTTAGACCTTTAAGCTATCCTCAAACTGATGTCTTCCTTATATGCTTCAGTGTAACAAGTCCCTCTTCATATGAAAATGTCACATCGAAATGGTACCCCGAAATAAAACATCACTGCCCCGATGCACCAATTATATTAGTGGGTACAAAAATCGATTTGAGAGATGATCGTGAAACGCTAAGTTTGCTGTCGGAACAAGGAATGTCTCCGCTGAAAAGGGAACAAGGACAGAAGCTCGCCAACAAAATTCGGGCCGTAAAATATATGGAGTGCTCAGCGCTAACACAAAGAGGCCTTAAACAGGTGTTCGACGAGGCTGTACGTGCAGTGTTAAGACCGGAACCACAAAAGAGACACCAGAGGAAGTGTTTGATTATGTAA
Protein
MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPMVVDGVAVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVTSPSSYENVTSKWYPEIKHHCPDAPIILVGTKIDLRDDRETLSLLSEQGMSPLKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAVRAVLRPEPQKRHQRKCLIM

Summary

EMBL
NWSH01001882    PCG69808.1    KQ460473    KPJ14519.1    ODYU01004378    SOQ44196.1    + More
GAIX01003814    JAA88746.1    AGBW02008443    OWR53392.1    GDQN01007920    GDQN01003736    JAT83134.1    JAT87318.1    KQ459551    KPI99976.1    KQ971312    EEZ99260.1    GEZM01030170    GEZM01030168    JAV85782.1    UFQS01000014    UFQT01000014    SSW97284.1    SSX17670.1    KK852854    KDR15004.1    GEBQ01008162    JAT31815.1    GECZ01014273    JAS55496.1    GAMC01020633    JAB85922.1    GFDF01005194    JAV08890.1    KQ434878    KZC09898.1    KQ979480    KYN21265.1    KQ977513    KYN02181.1    KQ414815    KOC60520.1    GL888206    EGI65191.1    KQ976453    KYM85325.1    JR040200    AEY59025.1    KQ981701    KYN37480.1    GL449438    EFN82685.1    ADTU01008608    KQ764027    OAD54630.1    GL442815    EFN62995.1    KQ982708    KYQ51802.1    KK107570    QOIP01000005    EZA48853.1    RLU23095.1    GBXI01010789    JAD03503.1    AJVK01021176    AJVK01021177    GAKP01018323    JAC40629.1    GDHF01011711    GDHF01005005    JAI40603.1    JAI47309.1    GFDL01014751    JAV20294.1    DS232275    EDS38929.1    CH899816    EAT32460.1    JXUM01022255    JXUM01022256    KQ560625    KXJ81541.1    GBYB01009704    JAG79471.1    GANO01001790    JAB58081.1    AXCM01005041    GBBI01000624    JAC18088.1    GBHO01045155    GBHO01034531    GBHO01021844    GBHO01021815    GBHO01016383    GBHO01016380    GBHO01016377    GBHO01013400    GBHO01011318    GBHO01007082    GBRD01003288    JAF98448.1    JAG09073.1    JAG21760.1    JAG21789.1    JAG27221.1    JAG27224.1    JAG27227.1    JAG30204.1    JAG32286.1    JAG36522.1    JAG62533.1    AAAB01008987    EAL38571.2    APCN01000885    JRES01001168    KNC24852.1    AXCN02000022    CCAG010002477    JXJN01020967    GGFM01005719    MBW26470.1    GGFK01007222    MBW40543.1    ADMH02001961    ETN60273.1    CH933806    EDW16825.1    CP012526    ALC45959.1    CH916373    EDV94520.1    GAHY01000736    JAA76774.1    CH940652    EDW59103.1    OUUW01000005    SPP80697.1    CM000070    EAL27028.1    CH479186    EDW38863.1    CH964232    EDW80873.1    CVRI01000003    CRK87020.1    DS235418    EEB15608.1    JH432049    KK114118    KFM61734.1    CH480837    CH684237    EDW49060.1    EDW56455.1    AF238044    AE014297    AY113279    AJ413188    AAF44665.1    AAF56727.1    AAF56728.1    AAM29284.1    AAN14120.1    CAC88352.1    CH902617    EDV43880.1    CM000160    EDW98484.1    CH954182    EDV53394.1    GFTR01003086    JAW13340.1    LJIJ01000092    ODN02931.1    KP765446    ALX18441.1    LRGB01001663    KZS10848.1    GDRN01035324    JAI67409.1    KZ288451    PBC25572.1    GL732587    EFX73948.1    GFXV01002662    MBW14467.1    GDIQ01006346    JAN88391.1   
Pfam
PF00071   Ras
Interpro
IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR003578   Small_GTPase_Rho       
SUPFAM
SSF52540   SSF52540       
PDB
5FI0     E-value=3.42788e-82,     Score=773

Ontologies

Topology

Length:
195
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04874
Exp number, first 60 AAs:
0.04581
Total prob of N-in:
0.19103
outside
1  -  195
 
 

Population Genetic Test Statistics

Pi
275.068931
Theta
180.741534
Tajima's D
1.679814
CLR
0.467168
CSRT
0.830608469576521
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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