SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03343  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006474
Annotation
PREDICTED:_protein_PFC0760c-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.281
 

Sequence

CDS
ATGAAAGAGGATTTATTGAAAACAAACATTGATCTGAATAACAAACCACGCATTTTTAGTCCTAGCGTGAATCAAAGAGGAAACAATCGTTACAAAGGTCCTTATTTAACTACAAATCAACCACTACACACTAAAGGAAATGAACAAAATAAAGATTACAGTAAAAATCAACAGGCAAGTAGTGAATTAGATGAATCTCGGGAAAAAAATGAAGACTATGAAGATGATGATGATGATGAAGACGGTGAATCGAATGAAAAAAATAAAAAAGAGAAATACGAAGATTTATCGGAATCATCAGAAAATACTAATAATCAGTATAATCATGAAAGTGGTGCTAATTCAGACGAAAGTAAAGAACATACTGAAAGCGATGAAATAAAGTCGAAATCCGTTAAACCTCTTGACGAGAGTCGTGAGAGTGACGAAGACAATTCCAAGGAATATCCAGGTAAAAAAATACAAGAATTCTACGATGGCCGTGATTATAAAAAATTGCAACTTAAACATCCAAAATCCCCTAACTCGAGTGAACAAAGTAATGAGACTACAGAATCAAATGAGCAATTACCAAATCGAGATAACGCAGAAACAAAAGTGAAATTAAATAACAATGCGAAGATACCTCTGCAAGATGTCCATTTGGATGATTTCAGCTATGAAAGAATTCAAGTAAACAAAAAAGGTGAAGTAGAAGTTCTCGAAGATAATGTAGAAAATTTAGAACGTGACGACCATTCCAAACCAAATTCTTCAAAGCCTTTAGTAAAAATAAGTAAATACGATGCATCTAGTTCAGCAGAAGATGTATCATCTAGTATTGAAACGAATCACGAAAATAACGTGCAAATTAAAATAAATGATGGAGAAATTAAGCCTGTTGTGGAAATTAACCCTGAAAATGAAAGTATCGAACTAATTGAAAACAACATGAAAAAACCCTTAAAGGCATTGCTTGGTGGTAATGACGAGAGCTTAGAAACAATGCTTGAAATAAATAAAGATACTAATGATAAAATAATTGTGAACAAAGAAACTGAAGACAATGAGGAGGCTAAGCAACAATTTGAGAGGATTCCTTTGGATTATAAGCACGACGACAACAGAAAGGAACCAAAATCTGAAGAGACTGAAAAATTAGATGATAATGAGGGTACCCTTGATACATTTTCTCCTATTGAAAACTACGACGAAAATTTAAACATTAAATTTGACGATGTTTCAATTAAATTACCAGAAATAAAATTACCCGATGATATTTTAACTTATACACAAGAACCTGTCTACGATTATGGAAAGCAAAAGGATGCGGAAAAAGGAAAGTTTTACCAATTCAATGACGATCAGTATAGTGACGAAAACGAAAAAGATACTCCCAAAGAGGATAATACCGATTACCCTAACTATTACGGATATTATGACGAACAAAACAAAAAGCAAAACTATAAAAAAAAAGATAATACTGAAGATGCTGAAGAAAATTATGATGACGATGACTTATATGAAAAATTTGTTCGAGAGAGATTTGGTAAACGAGGATCATTTGAAAAACGAGCTGAAAAATTACAAGACTCTAAAAGCAAGTCGTTTTATAATCCGAAATTGTACGAAACCATTCAGAATATTCTAAAAAAAACTGAAAATATAGAAAAAAATGCACAACAAAGTAAAGATCCGAAGGCGGGTTACATGTGGACCCTAGAATATGGCGAAAACGCGTAG
Protein
MKEDLLKTNIDLNNKPRIFSPSVNQRGNNRYKGPYLTTNQPLHTKGNEQNKDYSKNQQASSELDESREKNEDYEDDDDDEDGESNEKNKKEKYEDLSESSENTNNQYNHESGANSDESKEHTESDEIKSKSVKPLDESRESDEDNSKEYPGKKIQEFYDGRDYKKLQLKHPKSPNSSEQSNETTESNEQLPNRDNAETKVKLNNNAKIPLQDVHLDDFSYERIQVNKKGEVEVLEDNVENLERDDHSKPNSSKPLVKISKYDASSSAEDVSSSIETNHENNVQIKINDGEIKPVVEINPENESIELIENNMKKPLKALLGGNDESLETMLEINKDTNDKIIVNKETEDNEEAKQQFERIPLDYKHDDNRKEPKSEETEKLDDNEGTLDTFSPIENYDENLNIKFDDVSIKLPEIKLPDDILTYTQEPVYDYGKQKDAEKGKFYQFNDDQYSDENEKDTPKEDNTDYPNYYGYYDEQNKKQNYKKKDNTEDAEENYDDDDLYEKFVRERFGKRGSFEKRAEKLQDSKSKSFYNPKLYETIQNILKKTENIEKNAQQSKDPKAGYMWTLEYGENA

Summary

Pfam
PF01920   Prefoldin_2        + More
PF03098   An_peroxidase
Interpro
IPR002777   PFD_beta-like        + More
IPR009053   Prefoldin       
IPR010255   Haem_peroxidase_sf       
IPR019791   Haem_peroxidase_animal       
IPR037120   Haem_peroxidase_sf_animal       
SUPFAM
SSF48113   SSF48113       
Gene 3D

Ontologies

Topology

Length:
573
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00121
outside
1  -  573
 
 

Population Genetic Test Statistics

Pi
160.984028
Theta
162.794826
Tajima's D
-0.032215
CLR
0.000172
CSRT
0.35813209339533
Interpretation
Uncertain
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