Gene

KWMTBOMO03338  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007822

Annotation

heterogeneous_nuclear_ribonucleoprotein_A1_[Bombyx_mori]

Location

Bomo_Chr6(+):4855977-4862713      View in EpiBrowser

Full name

Heterogeneous nuclear ribonucleoprotein 87F      

Alternative Name

HRP36.1 protein
Protein P11

Location in the cell

Nuclear   Reliability : 4.124

CDS

ATGAAGCCTTCGGAAAGCGGCGATGACTATGAAGAACCTGAACACACACGTAAACTTTTTATCGGTGGACTCGACTATAGAACCACAGATTCTTCATTAAAAGAATTCTATGAGCAATGGGGAGAAATTGTAGATGTAGTTGTAATGAAAGACCCAAAAACCAAGAGATCAAAAGGATTTGGATTTATTACATATTCTCAAGCCCATATGGTTGATGAAGCTCAAAATAATAGGCCTCACAAAATTGACGGAAGAATTGTCGAGCCAAAACGAGCAGTTCCAAGGGAAGAGATTAAAAGACCAGAAGCTAGTGCCACCGTTAAAAAGTTGTTTGTAGCTGGACTGAAGCAAGACATTGAAGAAGAAGACTTGAGAGAGTATTTTAGTACATTTGGAAATATTGTTTCTGTTAGTGTTGTGACAGATAAAGAAACTGGAAAGAAAAGGGGCTTTGGTTTTGTAGAGTTTGATGATTATGATCCAGTTGACAGAGTATGCTTGCAACAAAATCACCAAATTAAAGATCAACATTTGGATGTGAAAAAAGCAATATCGAAAACTGACATGTCTGGCGGGGGTAATGATAGAGGAGGTCGCGGTCGACGCGGGGGTCGGGCGGGAGGCGGCGGAGGTTGGAGTCGTTCTGATCAATGGGGAAATCAAGATGGTAGTTTTAACCAGGGGCAAGGATACAGTCAAGGTGGCAACTGGGGGAATCAAAACCCTTGGGACGATAATGGTGGCGGAAACTGGTCTAATCAGGGCTATGGAGACCAGGCCATATAA

Protein

MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTDMSGGGNDRGGRGRRGGRAGGGGGWSRSDQWGNQDGSFNQGQGYSQGGNWGNQNPWDDNGGGNWSNQGYGDQAI

Description

This protein is a component of ribonucleosomes. Could be needed to organize a concentration gradient of a dorsalizing morphogen (Dm) originating in the germinal vesicle.

Keywords

Alternative splicing   Complete proteome   Cytoplasm   Nucleus   Reference proteome   Repeat   Ribonucleoprotein   RNA-binding  

Feature

chain  Heterogeneous nuclear ribonucleoprotein 87F
splice variant  In isoform B.

Uniprot

Q1HPT3   H9JE75   A0A2A4IUG6   A0A2H1VD13   A0A212F4N0   A0A1E1WPC4   + More
A0A194Q3P8   A0A194RF21   A0A0C9RFB0   A0A0J7KRE7   A0A195D789   A0A026VWW8   A0A158NMD2   E9IEE9   A0A151IS60   F4X5S6   A0A151I394   A0A087ZRH4   A0A2A3E027   A0A151JWA4   K7IYC6   D6WB34   A0A1B6H026   A0A2P8Z435   A0A154PD25   A0A1E1WR92   V5GYP9   A0A0L7LEL6   A0A067RFK7   S4PY68   N6TUW4   A0A1W4UQJ3   A0A2A4ISX5   A0A2H1VBA5   H9JA60   I4DJ40   B3P425   A0A1B6DND7   P48810-2   J9K9C9   A0A2S2QLG0   A0A194RA81   B4HFQ5   E1JIK0   P48810   B4PQG9   A0A212F4L1   Q16SW8   Q16SW9  

Pubmed

19121390    22118469    26354079    24508170    30249741    21347285    + More
21282665    21719571    20075255    18362917    19820115    29403074    26227816    24845553    23622113    23537049    22651552    17994087    1849257    1717937    1730754    10731132    12537572    12537568    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    17510324   

EMBL

DQ443319    ABF51408.1    BABH01002706    NWSH01007731    PCG62832.1    ODYU01001630    + More
SOQ38124.1    AGBW02010347    OWR48672.1    GDQN01002226    JAT88828.1    KQ459551    KPI99983.1    KQ460473    KPJ14526.1    GBYB01007100    JAG76867.1    LBMM01004104    KMQ92809.1    KQ976750    KYN08722.1    KK107871    QOIP01000007    EZA47354.1    RLU20737.1    ADTU01020388    ADTU01020389    GL762591    EFZ21040.1    KQ981090    KYN09555.1    GL888742    EGI58166.1    KQ976507    KYM82797.1    KZ288510    PBC25125.1    KQ981655    KYN38600.1    KQ971311    EEZ98934.2    GECZ01001740    JAS68029.1    PYGN01000205    PSN51255.1    KQ434869    KZC09304.1    GDQN01001560    JAT89494.1    GALX01002898    JAB65568.1    JTDY01001528    KOB73641.1    KK852665    KDR18962.1    GAIX01003813    JAA88747.1    APGK01053965    KB741239    KB632275    ENN72176.1    ERL91144.1    PCG62831.1    SOQ38123.1    BABH01009095    BABH01009096    BABH01009097    AK401308    BAM17930.1    CH954181    EDV49199.1    GEDC01010113    GEDC01000551    JAS27185.1    JAS36747.1    X54803    X58183    X58184    X59691    X62636    AE014297    BT012315    ABLF02033094    GGMS01009300    MBY78503.1    KPJ14527.1    CH480815    EDW42290.1    BT126124    ACZ94899.1    ADZ25120.1    AGB95920.1    CM000160    EDW97265.1    OWR48671.1    CH477664    EAT37551.1    EAT37550.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000036403    + More
UP000078542    UP000053097    UP000279307    UP000005205    UP000078492    UP000007755    UP000078540    UP000005203    UP000242457    UP000078541    UP000002358    UP000007266    UP000245037    UP000076502    UP000037510    UP000027135    UP000019118    UP000030742    UP000192221    UP000008711    UP000000803    UP000007819    UP000001292    UP000002282    UP000008820   

PRIDE

Q1HPT3    H9JE75    A0A087ZRH4    H9JA60    P48810    E1JIK0    + More

Pfam

PF00076   RRM_1        + More
PF00096   zf-C2H2

Interpro

IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR037366   BOULE/DAZ       
IPR035979   RBD_domain_sf       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF54928   SSF54928        + More
SSF57667   SSF57667       

Gene 3D

3.30.70.330    

ProteinModelPortal

Q1HPT3   H9JE75   A0A2A4IUG6   A0A2H1VD13   A0A212F4N0   A0A1E1WPC4   + More
A0A194Q3P8   A0A194RF21   A0A0C9RFB0   A0A0J7KRE7   A0A195D789   A0A026VWW8   A0A158NMD2   E9IEE9   A0A151IS60   F4X5S6   A0A151I394   A0A087ZRH4   A0A2A3E027   A0A151JWA4   K7IYC6   D6WB34   A0A1B6H026   A0A2P8Z435   A0A154PD25   A0A1E1WR92   V5GYP9   A0A0L7LEL6   A0A067RFK7   S4PY68   N6TUW4   A0A1W4UQJ3   A0A2A4ISX5   A0A2H1VBA5   H9JA60   I4DJ40   B3P425   A0A1B6DND7   P48810-2   J9K9C9   A0A2S2QLG0   A0A194RA81   B4HFQ5   E1JIK0   P48810   B4PQG9   A0A212F4L1   Q16SW8   Q16SW9  

PDB

2UP1     E-value=5.11511e-56,     Score=549

KEGG

100101226    K12741 heterogeneous nuclear ribonucleoprotein A1/A3 | (RefSeq) heterogeneous nuclear ribonucleoprot

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0016021   GO:0003729   GO:1990904   GO:0001745   GO:0000792   GO:0035062   GO:0008585   GO:0043565   GO:0009408   GO:0005703   GO:0000381   GO:0042594   GO:0000278   GO:0000785   GO:0005634   GO:0005654   GO:0005737   GO:0003676   GO:0000166   GO:0005576   GO:0005515   GO:0033177   GO:0000287   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR11176  

Subcellular location

Nucleus  
Cytoplasm  

Length:

261

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00068

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03538

outside

1  -  261

 

 

Pi

214.448538

Theta

188.759942

Tajima's D

0

CLR

0.206632

CSRT

0.367531623418829

Interpretation

Uncertain