Silkworm Genome Informatics Database

Gene

KWMTBOMO03337 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006405

Annotation

Heterogeneous_nuclear_ribonucleoprotein_at_87F_[Operophtera_brumata]

Location

Bomo_Chr6(-):4845255-4847736 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.528

CDS

ATGAGGCCACAAAATGGTGACGACGGATATGAAGAGCCGGAGGTTCACCGTAAAATCTTCATTGGCGGTCTTAATTACAAAACTACTGACGAGTCTTTAAAAACACATTTTGTAAAATGGGGAGAAATTGTCGATGTCGTCGTCATGAAGGATCCGAAAACTAAACGTTCTCGTGGCTTTGGATTCATTACTTATTCCAAGGCGCACATGGTTGACGACGCCCAGAACAACAGACCGCATAAAATTGATGGCCGATTCGTTGAAACCAAACGTGCTGTTGCAAGGCAAGATATCAAGAATCCTGAAGCTGGTGCAACTGTTAAGAAGCTGTTCATTGGGGGTATAAAAGATGATCATGAAGAGGAAGAACTAAGACAGTATTTTTCGAACTATGGCAACGTACAGAACGTTAGCATCGTCACAGATAAAAATACTGGAAAGAAGAGGGGATTTGGTTTTGTTGAATTTGATGACTACGACCCAGTTGACAAAGTTTGCTTAAATGGCCCCCACAAAATAAATGGAAAACCATTGGATGTAAAGAAAGCACTTCCTAAAGATGGGTCCGATCAGAGGGGTGGGGGTGGCGGTGGAGGCCGACAGGGTGGTGGCTCTGGCAGAAATGATAGCTGGGGCAGTTCAGGAGGATATGGCAACAACCAGGGTGGATGGGGAGGAAATTCGAACCCATGGGAAAGCAATCAGGGGGGTTGGGGAAATCAAGGAGGTGGTGGAGGTTATGGAGGAGGGGGTAATGGAAGAGGGGGTTGGGGAAATCAAGACTTTGGCAATTATAATCAGCAGAGTTATAGCGGGGGTCCAACTAGAAATCAAGCATATGGGAATAATAGGTCTACTCCATACAATATGAACCAGGGTGGCGGTGGTGGTGGTGGCGGCGGCTATGGCGGTGGTAACTATGGAGGTGGTCAGGGCAGAGGAGGTCGATTCTAA

Protein

MRPQNGDDGYEEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNNRPHKIDGRFVETKRAVARQDIKNPEAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDKVCLNGPHKINGKPLDVKKALPKDGSDQRGGGGGGGRQGGGSGRNDSWGSSGGYGNNQGGWGGNSNPWESNQGGWGNQGGGGGYGGGGNGRGGWGNQDFGNYNQQSYSGGPTRNQAYGNNRSTPYNMNQGGGGGGGGGYGGGNYGGGQGRGGRF

Uniprot

H9JA60 S4PY68

Pubmed

19121390 23622113

EMBL

BABH01009095 BABH01009096 BABH01009097 GAIX01003813 JAA88747.1

Proteomes

UP000005204

PRIDE

H9JA60

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf
IPR037366   BOULE/DAZ

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JA60 S4PY68

PDB

2UP1 E-value=7.70904e-56, Score=548

KEGG

101738991 K12741 heterogeneous nuclear ribonucleoprotein A1/A3 | (RefSeq) heterogeneous nuclear ribonucleoprot

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0003676 GO:0000166 GO:0005576 GO:0005515 GO:0033177 GO:0000287 GO:0006270 GO:0042555 GO:0048384

PANTHER

PTHR11176

Length:

317

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00765

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.03441

outside

1 - 317

Pi

119.666356

Theta

133.787365

Tajima's D

-0.830758

CLR

270.725491

CSRT

0.171291435428229

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	KIFIGGIKDDHEEEEIR	95.65	3e-10
26280517	GFGFVEFDDYDPVDK	95.65	3e-10
27102218	GFGFITYSK	95.65	3e-10
26280517	QWITIAEK	100.00	2e-08
28467696	QYFSNYGNVQNVSIVTDK	100.00	2e-08
26280517	MQTIWNIR	100.00	9e-07
28467696	MRNDNGIIEIEK	100.00	9e-07
26822097	IFIGGINYK	100.00	9e-06
26280517	QVYDIYGIK	100.00	9e-06
25044914	QYFFTWR	100.00	9e-06
28467696	QYFEDWN	100.00	9e-06
28556443	FAIPQPPESWK	100.00	9e-06
28556443	LFIGGIK	100.00	2e-04
28556443	IFIGGLNYK	100.00	2e-04
26822097	GFGFVEFDDYDPVDKVCINGPHK	100.00	6e-04
26280517	GFEEFSK	100.00	6e-04
25044914	GFGFVCFSSPEEATK	100.00	6e-04
24093152	GFEEVIKK	100.00	6e-04
28467696	GFGFVCFSSPEEATK	100.00	6e-04
25044914	AHMENFDTVAAMAK	100.00	0.001
24402669	AHGQDIGAPGSCIR	100.00	0.001
27102218	GFGFVEFDDYDPVDKVCINGPHK	100.00	0.001
26822097	GFGFITYSK	100.00	0.003
26280517	WANAAIWK	100.00	0.003
25044914	WGEIVDVVVMK	100.00	0.003
27102218	NQAYGNNR	100.00	0.003
28467696	WGADNSPIAK	100.00	0.003
28556443	WGEIVDVVVMK	100.00	0.003
28556443	GFGFITYSK	100.00	0.003
26280517	QDIEEEDIR	100.00	0.008

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree