Gene

KWMTBOMO03318

Pre Gene Modal

BGIBMGA006466

Annotation

PREDICTED:_juxtaposed_with_another_zinc_finger_protein_1_[Amyelois_transitella]

Location

Bomo_Chr6(+):4188641-4193167      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.937

CDS

ATGGCCGTCTTCATGATTAACATCTGTAAATTTAATGACTGTGGAATTATATTTCCAAGATTAACACAACTTATTGAACACATCGAGGATATTCATATAGATTACGATCCGGAGGTGGTAGAGCAGAAAGAGGCTTCCCAGCCGTCATGCATCCCACTAAGTTACATTTTGAAATATATATCAGAAGCGTCAAGACGCGAAAATCACAATGCACCTCCTGTTCCGGAGGTCCGCCGGCGTTTACTCTCCGCACCCAAAACACCATCAGTGCGCAGCAGTACACCCACAGGAAGTGAAATGGATGAAGACGAGGCAGGTACTCATTCAGAGGACAGTAATGACTCATGGACAACGGTAGAAGAGTACAGCTCTGAGTTCATATTGCGTTACGGGATGAGAATGAATCCAAACGCCTTGTCCGGGGCTTTGGGTCCTGTCGCTCAAGAGAAGCCATTTGCTTGCCCAGTACCTGGCTGCAAGAAGCGATACAAGAACGTCAACGGCATCAAGTACCACTCTAAGAACGGTCACAAGAAGGACGGCAAGGTAAGAAAGGCTTACAAATGCCAGTGCGGCAAAAGTTACAAAACCGCCCAAGGATTTAAGAGCCACTCCATATCGCAACACATCGCCAATAGCACAGTGCTGGCGGTCCCATCAGAGCTGGTCCGGCCGGCGCAGAGAATGCCCGCCGTCGTGGTGACGGCGTCGGGCTCTCGTCCGCACCACGGCCCCGACGGAGCTGACAGCAACAAGCTGGTTCGCATCTATGACACACTAAAAAACAAAGATCTCTCATCGTTTACCATCACTAAAAGTAATCTCGGCATCAATGTCCTATCGAAGCAAAGTCATTTACGTCACGGTCTCCCGTCGTCTCACTCCCCGCCCGTTACGAGTCTCGTTGAGAAAAATGTCGACGCTTATACTAAAGTGACGGTGCAGAGCGCCCAACAGGTTTACGCACAGTCTTTCACTAATGAGACGGCCAATTAA

Protein

MAVFMINICKFNDCGIIFPRLTQLIEHIEDIHIDYDPEVVEQKEASQPSCIPLSYILKYISEASRRENHNAPPVPEVRRRLLSAPKTPSVRSSTPTGSEMDEDEAGTHSEDSNDSWTTVEEYSSEFILRYGMRMNPNALSGALGPVAQEKPFACPVPGCKKRYKNVNGIKYHSKNGHKKDGKVRKAYKCQCGKSYKTAQGFKSHSISQHIANSTVLAVPSELVRPAQRMPAVVVTASGSRPHHGPDGADSNKLVRIYDTLKNKDLSSFTITKSNLGINVLSKQSHLRHGLPSSHSPPVTSLVEKNVDAYTKVTVQSAQQVYAQSFTNETAN

Uniprot

H9JAC1   A0A194RAM9   A0A2A4J3T1   A0A194Q365   A0A2H1W6R9   A0A212FKY3   + More
A0A0K8UZ63   A0A0K8WE69   A0A034V7V7   A0A0K8VEP6   A0A2P8XF54   B4PNB5   Q9V9Z6   A0A0B4K810   A0A0R1EBU8   A0A0A1XBI3   A0A2J7REB6   B4GN56   Q29CE9   A0A1W4UI25   A0A1W4UHZ4   B3M1K9   A0A0P9CA52   I5AMT0   B3P7R6   A0A3B0JKG7   B4I004   A0A0M4EHF6   B4QSK6   A0A3B0JEK7   A0A067RM36   E0VS75   B4NFC6   A0A0Q9X1F7   A0A232EU34   K7J2T0   B4K625   B4M5U6   A0A1B6BW75   B4JYP0   A0A1A9Z2E6   A0A224Z0D4   A0A1E1XGN9   A0A131YW98   L7LXQ2   A0A023G7G5   A0A3P8V531   A0A2U9AYQ9   A0A060XM74   A0A1S3M607   A0A3B4Y6A1   A0A3B4T5T0   A0A1S3Q1J8   H3DM52   Q1KKZ9   A0A147AAM3   A0A3P8NKD2   A0A3P9C9G1   A0A3B4GDS5   A8DSV7   I3J4A5   A0A3B5N0D4   A0A087XEK7  

Pubmed

19121390    26354079    22118469    25348373    29403074    17994087    + More
17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25830018    15632085    24845553    20566863    28648823    20075255    28797301    28503490    26830274    25576852    24487278    24755649    15496914    16636282    21551351    25186727    17845724   

EMBL

BABH01009016    KQ460685    KPJ12916.1    NWSH01003198    PCG66807.1    KQ459551    + More
KPI99997.1    ODYU01006696    SOQ48770.1    AGBW02007989    OWR54349.1    GDHF01020486    JAI31828.1    GDHF01002932    JAI49382.1    GAKP01019566    JAC39386.1    GDHF01015022    JAI37292.1    PYGN01002371    PSN30636.1    CM000160    EDW99197.2    AE014297    AY052003    AAF57132.2    AAK93427.1    AFH06702.2    AFH06703.2    KRK04724.1    GBXI01006464    JAD07828.1    NEVH01005277    PNF39181.1    CH479186    EDW39182.1    CM000070    EAL26697.2    CH902617    EDV43300.2    KPU80190.1    EIM52265.2    CH954182    EDV52974.1    OUUW01000005    SPP80812.1    CH480819    EDW53611.1    CP012526    ALC48041.1    CM000364    EDX15103.1    SPP80814.1    KK852427    KDR24088.1    DS235745    EEB16231.1    CH964251    EDW82993.1    KRF99705.1    NNAY01002172    OXU21875.1    CH933806    EDW16262.2    CH940652    EDW59022.2    GEDC01031752    GEDC01012010    JAS05546.1    JAS25288.1    CH916377    EDV90802.1    GFPF01009225    MAA20371.1    GFAC01000790    JAT98398.1    GEDV01005093    JAP83464.1    GACK01008662    JAA56372.1    GBBM01006598    JAC28820.1    CP026243    AWO96737.1    FR905325    CDQ78399.1    DQ481664    ABF22395.1    GCES01010740    JAR75583.1    EF594311    ABS70749.1    AERX01033821    AYCK01013337   

Proteomes

UP000005204    UP000053240    UP000218220    UP000053268    UP000007151    UP000245037    + More
UP000002282    UP000000803    UP000235965    UP000008744    UP000001819    UP000192221    UP000007801    UP000008711    UP000268350    UP000001292    UP000092553    UP000000304    UP000027135    UP000009046    UP000007798    UP000215335    UP000002358    UP000009192    UP000008792    UP000001070    UP000092445    UP000265120    UP000246464    UP000193380    UP000087266    UP000261360    UP000261420    UP000007303    UP000005226    UP000265100    UP000265160    UP000261460    UP000264840    UP000005207    UP000261380    UP000028760   

PRIDE

H9JAC1    Q9V9Z6   

Pfam

PF03154   Atrophin-1

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR002951   Atrophin-like       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JAC1   A0A194RAM9   A0A2A4J3T1   A0A194Q365   A0A2H1W6R9   A0A212FKY3   + More
A0A0K8UZ63   A0A0K8WE69   A0A034V7V7   A0A0K8VEP6   A0A2P8XF54   B4PNB5   Q9V9Z6   A0A0B4K810   A0A0R1EBU8   A0A0A1XBI3   A0A2J7REB6   B4GN56   Q29CE9   A0A1W4UI25   A0A1W4UHZ4   B3M1K9   A0A0P9CA52   I5AMT0   B3P7R6   A0A3B0JKG7   B4I004   A0A0M4EHF6   B4QSK6   A0A3B0JEK7   A0A067RM36   E0VS75   B4NFC6   A0A0Q9X1F7   A0A232EU34   K7J2T0   B4K625   B4M5U6   A0A1B6BW75   B4JYP0   A0A1A9Z2E6   A0A224Z0D4   A0A1E1XGN9   A0A131YW98   L7LXQ2   A0A023G7G5   A0A3P8V531   A0A2U9AYQ9   A0A060XM74   A0A1S3M607   A0A3B4Y6A1   A0A3B4T5T0   A0A1S3Q1J8   H3DM52   Q1KKZ9   A0A147AAM3   A0A3P8NKD2   A0A3P9C9G1   A0A3B4GDS5   A8DSV7   I3J4A5   A0A3B5N0D4   A0A087XEK7  

PDB

2YT9     E-value=0.0111503,     Score=90

KEGG

101738138    K19495 juxtaposed with another zinc finger protein 1 | (RefSeq) juxtaposed with another zinc finger

GO

GO:0003676   GO:0005634   GO:0045944   GO:0060271   GO:0007368   GO:0046872   GO:0045263   GO:0015991   GO:0033177   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  

Length:

331

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000890000000000001

Exp number, first 60 AAs:

0.0006

Total prob of N-in:

0.02505

outside

1  -  331

 

 

Pi

174.676526

Theta

145.154322

Tajima's D

0.548123

CLR

0

CSRT

0.527273636318184

Interpretation

Uncertain