SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03316
Pre Gene Modal
BGIBMGA006465
Annotation
PREDICTED:_double-strand-break_repair_protein_rad21_homolog_[Bombyx_mori]
Location
Bomo_Chr6(+):4168011-4181446      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.152
 

Sequence

CDS
ATGTTTTATGCACATTTTGTGCTGGCTAAGAAGGGTCCGCTGGCCAAGATTTGGCTGGCGGCCCACTGGGATAAGAAATTGACAAAAGCACACGTATTTGAAACTAATATCGAGAAATCAGTTGATGGTATTTTAAAGCCTAAAGTGAAGATGGCATTGCGTACTTCTGGACACCTTTTGCTTGGAGTTGTGAGAATCTACTCGAGAAAAGCCAAGTATCTGTTGCAAGACTGTAACGAAGCTTTTGTCAAGATTAAGTTGGCCTTCAGACCTGGCATGGTAGATCTTCCCGAAGAGCACAGGGAGGCTGCTATGAATGCTATCACCTTACCAGAGGTCTTTCATGACTTTGACACAGCCATGCCTGAATTAAATGAGGTTGATATTGAAGCCCAATTCTCTTTAAACCAGTCAAGAGCAGAAGAGATCACGATGCGTGAGGATTATGGATCATTAAACCTTGTCACCCATGATGATGGCTTTGGAGACATGGGTTTTGACACTGATAATCCTGACATTATGAGAGAAGGTATTGGTTCTGAAGGTGGACTGGAGCAGAGCAACCTACTTTTTGCTGATGGGTCATCATTAGAATTGGGAGGCAAGGAGTCTAGTTCAGGTCCAGGTTCAGTGCACGCTCGCACTTTGGAGCCAGCCCCACATGCTCCTGTAGATGATGGTTTCGGTGGTACTATTGGAGATGTGCCGGACTTTGGACATGCAGGAGGGCTGTTCGAAGGAGATTTGTTCGGAGATGTTACAGCTAGCGCAAGTGGTTCAGGCACGGCTTCAGGCATGCCTGGAGCTTCTGCACAACCACAGTCTTTACAGGCGGAGATAGAGGCGGCGGGCGCGGGGCCGGCGGACGCGCCCGACTCTGATGACGACATGCCCGACCACTACGACGCGCCCTCGCCGCACCACAGTTGGGGTGGATCCCCGGTTCGCGAGGAGCCGGTGCCCGAAGAAGAAGCAGTACCGGAAATGGCGCCCCCGCCCGTACCTCGACCGCCCTCCGTCAGACCAATGGAAGTTGACGAGATTCCGGAGCCCGCACCGCCGACCCCCGGTCCCGTTGAGCCTCCGGATAACACCACGCTGCTGAACAACGATGAAGAATCATTTGCACTTGCACCTGTTGATGCCACAGTACTAAAAGGAATAACAAAAACAAAACGCAAACGTAAGCTTATCGTGGATGAAATAAAAAACATATCGGGCGAAGAAATGAAAAACCAACTGAGCAACACTTCCGATATTGTAACAACATTAGATCTTGCTCCCCCTACTAGGCGTCTTATGCACTGGAAGGAAACTGGGGGTGTTGAAAAGCTATTCACATTACCAGCTAGACCGATCCCATCAAGAGTTCTGTTCAAGAAATACCAGCGCAACATGACCTTGCGCAGTGAGGCAGAAGAAGAGGCCAAGTCACCAGACCCGGAACCCAGCGTCGTGAGACGAGGCGGACGTAAACGTAAACATGAAGATCATTTACCGCCCCCGGATACACCAGCGCCTCAGCCCGTCGAACTGGAGGCACCCACTCCAATGCCGCACGAATATGAACCTTCAGTCGAGACGAGCGAGGGAGCGTTCGCGCAAACACCGCGTCCAGATCTCGATGTAGACCCTCCGCAGACTCCAGGTGGCATAATGTCGTCCTTGGGTCCGTTGACTCCGGGAGGGCTGGGCCCACTTACTCCGGGCACATTATTACAGGCGGCACTCACACCACCTTCATTAGCGCATGGGTCGCTGACGCCAGGTGGTCTGCAACATGGCGGAATGACGCCGGCGGGGTTACAACACGGCGAAAACCATTCCGTAGAATTGGGCTTGCCTCCTAGTGGAATGACCCCAGCAGGCTTGCATCATGGAGGAATGACGCCAGGATTGGGTTTGGATAGTGGAATGACTCCAGCGGGCTTAGTGCATGGAGGTCTTACACCCGCTGGCTTACACCATGGTGGTATGACGCCCGGAGGGTTGGAACACGGTGGCATGACACCAGTAGGGTTACAGCACGGTGGAATGACCCCGGCCGGCCTGCAACACGGCAGCATGACGCCGGTCGGACTCCAACACGGAGGCATGACGCCGGCCGGACTTCAGCACGGAGCCATGACGCCTGTGGGGCTGCAGCACGGCGGTATGACCCCGGCGGGCCTGCAGCACGGTGGTATGACGCCGGCAGGGCTACAACATGGCGGCATGATCCCCGCAGGCGTGTCGTCGGGCGCGCTGCTGCAGGTGTCGGGCGAGGTGCCGATGATGCCGCAGGTGTGCGGCGCGGAGCCGGTGGCGGCGCTGGGGTCGGGGCGCGCGCTGTCCGCGCCGCCGCCCGCCGACCACCTCGCGCACTCCGTGCCGCTCGAGCCGCTGCACAACCCGCTCGACGACCACGATCATCTACAGAATGGTATGCAGATGACTAATTTGGGCTATGATGAGCAACAACATGGTCATCAAAGTCCACAGCATGACTATGATCTACCGCCTACTCCCGAGAATGCTGACGACGGTGAGAGGGAAGCTGGGGAAACAGACGAACAGTTCGAACAGCGCGTGTTAAATAGACGAGCGGCGCAACTGTTCGCAGTGATGAGACCCAAGATTGCTGCGGGAATGACTCTTAGCTTCGCAGATTTAGCGCCTAGACACAATAATAAGAAACAGGTTGCACAAAAGTTTTACAGTCTCCTTGTTCTGAAGAAATATCAAGTGTTGAAGATAGAACAAAACGAAACATACGGACCTATAACTATCACAAGAGGTGCACAGTTTGAAACCGAAGCAATCTAA
Protein
MFYAHFVLAKKGPLAKIWLAAHWDKKLTKAHVFETNIEKSVDGILKPKVKMALRTSGHLLLGVVRIYSRKAKYLLQDCNEAFVKIKLAFRPGMVDLPEEHREAAMNAITLPEVFHDFDTAMPELNEVDIEAQFSLNQSRAEEITMREDYGSLNLVTHDDGFGDMGFDTDNPDIMREGIGSEGGLEQSNLLFADGSSLELGGKESSSGPGSVHARTLEPAPHAPVDDGFGGTIGDVPDFGHAGGLFEGDLFGDVTASASGSGTASGMPGASAQPQSLQAEIEAAGAGPADAPDSDDDMPDHYDAPSPHHSWGGSPVREEPVPEEEAVPEMAPPPVPRPPSVRPMEVDEIPEPAPPTPGPVEPPDNTTLLNNDEESFALAPVDATVLKGITKTKRKRKLIVDEIKNISGEEMKNQLSNTSDIVTTLDLAPPTRRLMHWKETGGVEKLFTLPARPIPSRVLFKKYQRNMTLRSEAEEEAKSPDPEPSVVRRGGRKRKHEDHLPPPDTPAPQPVELEAPTPMPHEYEPSVETSEGAFAQTPRPDLDVDPPQTPGGIMSSLGPLTPGGLGPLTPGTLLQAALTPPSLAHGSLTPGGLQHGGMTPAGLQHGENHSVELGLPPSGMTPAGLHHGGMTPGLGLDSGMTPAGLVHGGLTPAGLHHGGMTPGGLEHGGMTPVGLQHGGMTPAGLQHGSMTPVGLQHGGMTPAGLQHGAMTPVGLQHGGMTPAGLQHGGMTPAGLQHGGMIPAGVSSGALLQVSGEVPMMPQVCGAEPVAALGSGRALSAPPPADHLAHSVPLEPLHNPLDDHDHLQNGMQMTNLGYDEQQHGHQSPQHDYDLPPTPENADDGEREAGETDEQFEQRVLNRRAAQLFAVMRPKIAAGMTLSFADLAPRHNNKKQVAQKFYSLLVLKKYQVLKIEQNETYGPITITRGAQFETEAI

Summary

Uniprot
H9JAC0  
Pubmed
19121390   
EMBL
BABH01009014    BABH01009015   
Proteomes
UP000005204   
PRIDE
H9JAC0   
Pfam
PF04824   Rad21_Rec8        + More
PF04825   Rad21_Rec8_N
Interpro
IPR036390   WH_DNA-bd_sf        + More
IPR039781   Rad21/Rec8-like       
IPR006909   Rad21/Rec8_C_eu       
IPR006910   Rad21_Rec8_N       
SUPFAM
SSF46785   SSF46785       
ProteinModelPortal
H9JAC0  
PDB
4PJW     E-value=1.0461e-27,     Score=311

Ontologies

KEGG
101738992    K06670 cohesin complex subunit SCC1 | (RefSeq) double-strand-break repair protein rad21 homolog
GO
GO:0007062   GO:0008278   GO:0000228   GO:0005515   GO:0006412   GO:0005622   GO:0006432   GO:0000287   GO:0003723   GO:0006270   GO:0042555   GO:0048384  
PANTHER
PTHR12585  

Topology

Length:
934
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02418
Exp number, first 60 AAs:
0.00202
Total prob of N-in:
0.00016
outside
1  -  934
 
 

Population Genetic Test Statistics

Pi
204.867706
Theta
179.684535
Tajima's D
0.382869
CLR
0.038375
CSRT
0.485175741212939
Interpretation
Uncertain
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