Silkworm Genome Informatics Database

Gene

KWMTBOMO03311 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006463

Annotation

eukaryotic_initiation_factor_4B_protein_[Bombyx_mori]

Location

Bomo_Chr6(+):4105431-4115174 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.853

CDS

ATGGCCGCTACAGGCAAGAAGTCAAAGAAGGCAAAATGGATCAAAGCCGACATCACAAGCATTATAGCAGAACCGACCACAATCGCAACTACCAACAATTGGGCGAACGCTGCAGAAGATGAAACGGAAAATTTTGGATATGCATCGCATACACGGGCACCAGTTGTACTGCCTTCAGCTTCTCGTGCAGCACGAGGAGGCTTGGCAGTTGATGATGAGTCAATACCACATCGCCCCCCATTTATTGCACACATCTCTAATCTGCCTTATGATGTTGAAGAAAGTGCTATTGCAGAGTTATTTGCTGACCTTAAGGTTACCAACTTAAGACTTCCAAGAGAGGGTGACAGACTCAAAGGTCATGGATATGTTGATTTTGAAGACAGAGAAAATTTAATTGAAGCTCTCAATATGCCAGACTTGACAATAGGTGGCAGGAGAGTACGAATTGAGGTGTCTACTCCAGATGACCGTCGAATGGGACGAAGTGGACGCTCTGATAGAGATAGGGACTATGACCCTGAGCGTACAATGGGTGACTGGCGCTCCGGACCCCGCGCTGTACCCGACGCGCCCGGCCGCCCTCGTCCTCCCAATGACAGAGAACGAGATCGGGATCGGGATCGCGAAAGAGACTCGAGTGCAGATAACCGTCCGGGAGCCTGGCGCGACGCCGAGCGAGCCCCCGAGCCCGCGCGGGCCCCCTACGGCGGGAGGGACTCCTTCGGACGTGACCGCTATGGAGAGGATAGAGGTAGAGATCGGGGTTATGGTGGACGAGATGGATTCCGTGCTGCACCAGACCGTGAAGGAGGATTCAGCAGAGATAGTAGAGGATTCGGCGGCAGAGGTTTTGGCGATCGTGATCGTGACCGGGACCCACCTCCAAGAGAAGACACAAAACCTCGTGAACGTCCTAAGTTGAATTTGTTACCGCGCACTGTGCCTCGCGAGACCGAAGCCCCCACCAAGCCCGCCGACGGAGCGCCCCTGGAGGAAAAACAAGAGAAACAGGCTCCGAAGCCGGTGCCTGCTGAAAAAGTGTTTGGCGGCGCTAAACCTGTTGACACTGCTGCTAAGGAAAGAGAAATTGAAGAGCGTCTACGAAAACAGGAAGAAGAAGCCAGACGCGTTGCTGAAGAAAAAGAACGTTGGGGGGGACGTAGAAATGATCACTCTGGAGATCGTCGTGGAGGTGCTAGAAGAGACGATCGCGGCAGAGATTCGCGAAGCTTCAACAGGGAGCGACGAGATTATTCTAAGGACGACAAGGATCGGCGCGACGACCGAGAAAAAAGGGACTACAGGGACGATAGAGACAGGCGCGACTACAACAGGGACAGTAGAGATCGGCGCGATCCCAAAGACGAGAGAGAACGCAGAGACTACACCCCCGACCGACGGGACCCCTCGCCCGCCTCGCCAGCGCGCAGGAGAGATTCCGTAGAGCGCGATCAAGAAAGAAACGGACGACCCAGTCGTTCACGTGATCGACGCGACGACACTGACGAGAAACCACTGCCCAAATTAAAAGAACAAGAAAAACCCAATTTCGTTGCATCCAACAAGTTTAGCTTCCTTGAAGACGCCGACGACGCTGCATCTGAATAA

Protein

MAATGKKSKKAKWIKADITSIIAEPTTIATTNNWANAAEDETENFGYASHTRAPVVLPSASRAARGGLAVDDESIPHRPPFIAHISNLPYDVEESAIAELFADLKVTNLRLPREGDRLKGHGYVDFEDRENLIEALNMPDLTIGGRRVRIEVSTPDDRRMGRSGRSDRDRDYDPERTMGDWRSGPRAVPDAPGRPRPPNDRERDRDRDRERDSSADNRPGAWRDAERAPEPARAPYGGRDSFGRDRYGEDRGRDRGYGGRDGFRAAPDREGGFSRDSRGFGGRGFGDRDRDRDPPPREDTKPRERPKLNLLPRTVPRETEAPTKPADGAPLEEKQEKQAPKPVPAEKVFGGAKPVDTAAKEREIEERLRKQEEEARRVAEEKERWGGRRNDHSGDRRGGARRDDRGRDSRSFNRERRDYSKDDKDRRDDREKRDYRDDRDRRDYNRDSRDRRDPKDERERRDYTPDRRDPSPASPARRRDSVERDQERNGRPSRSRDRRDDTDEKPLPKLKEQEKPNFVASNKFSFLEDADDAASE

Uniprot

H9JAB8

Pubmed

19121390

EMBL

BABH01009007

Proteomes

UP000005204

PRIDE

H9JAB8

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JAB8

PDB

6FEC E-value=3.66254e-11, Score=166

KEGG

778479 K03258 translation initiation factor 4B | (RefSeq) eukaryotic initiation factor 4B protein

PATHWAY

03013 RNA transport - Bombyx mori (domestic silkworm)
04150 mTOR signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0097010 GO:0006413 GO:0003723 GO:0003676 GO:0000166 GO:0004672 GO:0005524 GO:0006432 GO:0000287 GO:0006270 GO:0042555 GO:0048384

Length:

536

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01021

Exp number, first 60 AAs:

0.01021

Total prob of N-in:

0.00993

outside

1 - 536

Pi

258.127625

Theta

200.699545

Tajima's D

0.802498

CLR

0.000009

CSRT

0.6033198340083

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics