SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03297  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006426
Annotation
PREDICTED:_mod(mdg4)-heS00531_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr6(-):3771914-3774211      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.274
 

Sequence

CDS
ATGGCGTCGGACGAACAATTTTCACTATGCTGGAACAATTTCCACGCAAATATGTCAGCGGGCTTTCATGGCCTGCTGTCGCGTGGAGATCTCGTAGACGTAACGTTGGCTGCCGAAGGCAGGTTATTGCAAGCACATAAATTAGTTCTATCAGTATGTTCTCCCTATTTTCAAGAAATGTTCAAAATGAATCCAACACAACATCCGATAGTATTTTTAAAAGATGTTAGTCATTCTGCACTAAGAGACTTATTACAGTTTATGTATCAAGGTGAAGTTAATGTTAAGCAAGAAGAATTAGCATCATTTATTAGTACAGCGGAACAACTTCAAGTTAAAGGTTTAACCGGTAATCAAAATGAAGAAAGTTCCACGCCATCCAAACCAAAGCCGACTTCGAGGCCAGGCCCCAGGTCGTCACAACAAAGACAATCTGTTATGACTAAGTTAGAGACTGATCTAGATTCTAAGCCCTCCTCAACTCCAGTAGCCGTTAAGAGGCCAAATAGGCCATCAATAGCATCAAATAACTCTTCTTCCTCACAAAGTGGACCAGCGAAACGAAAATGCGTAGATCCACTGGAAGCAGGTCCCTCTGGTTCTGCAAAAGACGAATTTGTGACGATACCAGACGAAGATGAGAACAATGCTGTCGCTCCCAAAATGGAACCAGAGTTTGTTAATGAGAGTATGTGGGATGACGATGAAGATGGCACGAACAATGACGAAACTAATTACGGAGAGGACGATTCTAATATGGAAATGACTGGTTTTGATGGCTCTGCAACTGGAGATGTTAATATTTCTGGAGGTGAAGGTGGAGCAGTCGGCGATGCACAAGGAAATATGTCTGGCGTGTTGTGGCTTATGTCCGGCGACCATAGATTGTGGAAGTTCAAGCGTGATTGTCACGATGTAGGTATATCAATTTCGTAA
Protein
MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEESSTPSKPKPTSRPGPRSSQQRQSVMTKLETDLDSKPSSTPVAVKRPNRPSIASNNSSSSQSGPAKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWDDDEDGTNNDETNYGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQGNMSGVLWLMSGDHRLWKFKRDCHDVGISIS

Summary

Uniprot
H9JA81   Q6IE02   A0A2A4J870   A0A0L7KUD6   A0A212F2Z5   A0A2W1BW18   + More
S4NI51   I4DN72   I4DR50   A0A0N1I717   A0A2H1WB26   A0A194Q7M9   A0A182U271  
Pubmed
19121390    15094203    26227816    22118469    28756777    23622113    + More
22651552    26354079   
EMBL
BABH01008984    BN000406    CAE54311.1    NWSH01002702    PCG67650.1    JTDY01005568    + More
KOB66878.1    AGBW02010641    OWR48118.1    KZ149939    PZC76980.1    GAIX01014204    JAA78356.1    AK402748    BAM19362.1    AK404944    BAM20390.1    KQ460650    KPJ13073.1    ODYU01007474    SOQ50279.1    KQ459579    KPI99410.1   
Proteomes
UP000005204    UP000218220    UP000037510    UP000007151    UP000053240    UP000053268    + More
UP000075902   
PRIDE
H9JA81    Q6IE02   
Pfam
PF00651   BTB        + More
PF04500   FLYWCH
Interpro
IPR011333   SKP1/BTB/POZ_sf        + More
IPR000210   BTB/POZ_dom       
IPR007588   Znf_FLYWCH       
SUPFAM
SSF54695   SSF54695       
ProteinModelPortal
H9JA81   Q6IE02   A0A2A4J870   A0A0L7KUD6   A0A212F2Z5   A0A2W1BW18   + More
S4NI51   I4DN72   I4DR50   A0A0N1I717   A0A2H1WB26   A0A194Q7M9   A0A182U271  
PDB
4HXI     E-value=2.15389e-08,     Score=139

Ontologies

KEGG
100127127    no KO assigned | (RefSeq) Mod(mdg4); Mod(mdg4)-heS00531
GO
GO:0005515   GO:0005634   GO:0006355   GO:0008270   GO:0043565   GO:0016020   GO:0006270   GO:0042555   GO:0048384  

Topology

Length:
311
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02726
Exp number, first 60 AAs:
0.02636
Total prob of N-in:
0.01235
outside
1  -  311
 
 

Population Genetic Test Statistics

Pi
164.869179
Theta
159.983449
Tajima's D
-0.668251
CLR
0.185249
CSRT
0.20213989300535
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 MNPTQHPIVFIK 100.00 1e-05
28556443 GLTGNQNEESSTPSKPK 100.00 1e-04
28556443 PLAIDLLHPSPASER 100.00 7e-04
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