Silkworm Genome Informatics Database

Gene

KWMTBOMO03291

Annotation

PREDICTED:_probable_nuclear_hormone_receptor_HR3_[Limulus_polyphemus]

Location

Bomo_Chr6(+):3417156-3417904 View in EpiBrowser

Location in the cell

Extracellular Reliability : 2.499

CDS

ATGTCGTATTCATCATTTGAAGAACTTCTTGAGATTCTTAAACCGGAAGTAACTCGTCAAAATACAGTCCTAAGATTATGTACACTCAACTGTCCCGTATGCAAGGATCTCGCCAACGGTTTGCACTACGGCGTCGTCACGTGCGAATCCTGCAAATGTTTCTTCAAAAGGACCGTGAGTTACGGAAAGGCGAAGTCTTTTAAATGCCCTCGCAACAATCGATGTGTTTTGACCCCGAAGCGGCGCAATTGCAGGTATTGTAGGTATCAGAAATGTCTAAAGGTGGGCATGTTGGTTCATTTAGTAAAATCAGTAAACCATGACTTTGAATAA

Protein

MSYSSFEELLEILKPEVTRQNTVLRLCTLNCPVCKDLANGLHYGVVTCESCKCFFKRTVSYGKAKSFKCPRNNRCVLTPKRRNCRYCRYQKCLKVGMLVHLVKSVNHDFE

Similarity

Belongs to the nuclear hormone receptor family.
Belongs to the nuclear hormone receptor family. NR3 subfamily.

Uniprot

A0A2W1CJF3 A0A3M0JIM0 A0A1A9W2H6 A8DY91 A0A2W1CMW9 A0A1Z5L349 + More
A0A1B0BKI1 Q0KFU7 A0A182G7X6 H3DK17 A0A0F8BX34 A0A2I4BJP8 A0A2I4BJT7 A0A2I4BJU0 A0A2I4BJU2 A0A2I4BJW4 A0A2I4BJP6 A0A3P8U1M6 A0A147B510

Pubmed

28756777 10731132 12537568 12537572 12537573 12537574 + More
16110336 17569856 17569867 28528879 17258436 26483478 15496914 25835551

EMBL

NHMN01024282 PZC87402.1 QRBI01000144 RMC00639.1 AE013599 ABV53751.1 + More
PZC87401.1 GFJQ02005352 JAW01618.1 JXJN01015952 JXJN01015953 AM259130 CAJ90623.1 JXUM01047049 KQ561502 KXJ78371.1 KQ042009 KKF19541.1 GCES01000449 JAR85874.1

Proteomes

UP000269221 UP000091820 UP000000803 UP000092460 UP000069940 UP000249989 + More
UP000007303 UP000192220 UP000265080 UP000265000

Pfam

PF00105 zf-C4 + More
PF00104 Hormone_recep

Interpro

IPR001628   Znf_hrmn_rcpt        + More
IPR013088   Znf_NHR/GATA
IPR016355   NR5_fam
IPR035500   NHR-like_dom_sf
IPR001723   Nuclear_hrmn_rcpt
IPR000536   Nucl_hrmn_rcpt_lig-bd
IPR001728   ThyrH_rcpt
IPR027289   Oest-rel_rcp
IPR024178   Oest_rcpt/oest-rel_rcp

SUPFAM

SSF48508 SSF48508

Gene 3D

3.30.50.10 1.10.565.10

ProteinModelPortal

A0A2W1CJF3 A0A3M0JIM0 A0A1A9W2H6 A8DY91 A0A2W1CMW9 A0A1Z5L349 + More
A0A1B0BKI1 Q0KFU7 A0A182G7X6 H3DK17 A0A0F8BX34 A0A2I4BJP8 A0A2I4BJT7 A0A2I4BJU0 A0A2I4BJU2 A0A2I4BJW4 A0A2I4BJP6 A0A3P8U1M6 A0A147B510

PDB

3E00 E-value=1.10428e-15, Score=196

KEGG

693070 K08705 nuclear receptor subfamily 5 group A member 3 | (RefSeq) Ftz-f1, BFTZ-F1, BmFTZ-F1, NR5A3; nu

GO

GO:0008270 GO:0003700 GO:0043565 GO:0005634 GO:0046872 GO:0003677 GO:0003707 GO:0004879 GO:0071599 GO:0006351 GO:0005496 GO:0006355 GO:0016020 GO:0006270 GO:0042555 GO:0048384

PANTHER

PTHR24086

Subcellular location

Nucleus

Length:

110

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00242

Exp number, first 60 AAs:

0.00186

Total prob of N-in:

0.04061

outside

1 - 110

Pi

198.172853

Theta

186.169921

Tajima's D

0.167062

CLR

0.049404

CSRT

0.417029148542573

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics