Gene

KWMTBOMO03270

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_C10orf11-like?_partial_[Bombyx_mori]

Location

Bomo_Chr6(-):2700928-2706406      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.639

CDS

ATGGATGACAAAATAAACAATCATGCAAGTTGCTCTAGTGTTCCTGATGAGGGAGTGATTTCAGTGGACCTGTCTAGAGATATAGTCGTCGACTCAATGACAGACATGACAGAAGCCATAATATCTCCTAATTTAATTGTGGACAATGAAGAGGACTCTACAAAACTGACTCTGGCCTATGAATGGCTGTATGAAGTGCCAAGGACAATAGTGGATAAATTTTCCAATCACATAAAATATTTGGATATAAGCCACAATAAAATTACGAATTTAGATCCTCTAGTTCACTTCTTCCACTTATCATCATTGATAGCCGACCACAATCCTATCACGGAGAACTGTGCGCTACCACCATTACCGAAACTAGAATTATTATGGTTAAATCATTGTAAGATAGCCTCATTGTACCCATGGGTGGGTAAACTAAAGGAATCCTGCCCAAATTTGCAGTATCTATGCTTAATGGGCAATCCTGCTGCGCCCAGCTACTTCAATGGAGGAACTTTCTATGAATACTTGCAGTATAGACTCTTCATTATATCTCAGTTCCCATTGTTAAATCATTTGGACGATAGAAAGGTCACCGACGACCAAAGGACCGAAGCCCTGAGGCTGTACAAGAGGCCTTTCTTGGAAAGGTTAGTGTCGCCCGGCTCCAGAGGTGGTATATCACAGCTGATGCAAGCCCCGGCTAAATGGAACACCGTCCACGGGAAACTCAACTCGTTGTGGAGCAAGGCCAAGAATCGGAACCTTTTGATATAA

Protein

MDDKINNHASCSSVPDEGVISVDLSRDIVVDSMTDMTEAIISPNLIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPLVHFFHLSSLIADHNPITENCALPPLPKLELLWLNHCKIASLYPWVGKLKESCPNLQYLCLMGNPAAPSYFNGGTFYEYLQYRLFIISQFPLLNHLDDRKVTDDQRTEALRLYKRPFLERLVSPGSRGGISQLMQAPAKWNTVHGKLNSLWSKAKNRNLLI

Uniprot

A0A2H1WYB6   A0A1E1W7K2   A0A212ERH2   A0A2W1BAM8   A0A0N1IPA3   A0A194Q7S0   + More
A0A0L7LKZ7   D6WCN2   A0A1Y1K368   A0A1Y1K382   A0A1Y1K602   A0A1Y1K381   A0A088AE25   A0A2A3ESP0   A0A232F2S0   K7JWV6   A0A0L7R294   A0A154PJK0   E2BCE1   A0A226EU92   E2ADZ4   A0A1B6DQM7   E2BCE0   U4U1F2   J3JZ65   N6TDB6   N6T681   A0A182JMS7   A0A2M4D0R6   A0A023ENQ7   A0A023ELS6   A0A182MTQ8   A0A023ELR2   A0A182GPB5   A0A1Q3EVN9   A0A1Q3EVP3   A0A1Q3EVQ9   R4WDU4  

Pubmed

22118469    28756777    26354079    26227816    18362917    19820115    + More
28004739    28648823    20075255    20798317    23537049    22516182    24945155    26483478    23691247   

EMBL

ODYU01011560    SOQ57374.1    GDQN01008078    JAT82976.1    AGBW02013025    OWR44075.1    + More
KZ150268    PZC71691.1    KQ460650    KPJ13121.1    KQ459579    KPI99455.1    JTDY01000687    KOB76213.1    KQ971317    EEZ97805.1    GEZM01094127    JAV55914.1    GEZM01094129    JAV55912.1    GEZM01094130    JAV55911.1    GEZM01094128    JAV55913.1    KZ288187    PBC34720.1    NNAY01001189    OXU24809.1    KQ414666    KOC65000.1    KQ434938    KZC12036.1    GL447257    EFN86677.1    LNIX01000002    OXA60790.1    GL438827    EFN68227.1    GEDC01009313    JAS27985.1    EFN86676.1    KB631984    ERL87709.1    BT128546    AEE63503.1    APGK01042104    APGK01042105    KB741002    ENN75718.1    ENN75719.1    GGFL01006510    MBW70688.1    GAPW01003534    JAC10064.1    GAPW01003381    JAC10217.1    AXCM01004825    GAPW01003395    JAC10203.1    JXUM01078114    KQ563045    KXJ74576.1    GFDL01015671    JAV19374.1    GFDL01015665    JAV19380.1    GFDL01015651    JAV19394.1    AK417973    BAN21188.1   

Proteomes

UP000007151    UP000053240    UP000053268    UP000037510    UP000007266    UP000005203    + More
UP000242457    UP000215335    UP000002358    UP000053825    UP000076502    UP000008237    UP000198287    UP000000311    UP000030742    UP000019118    UP000075880    UP000075883    UP000069940    UP000249989   

Pfam

PF12799   LRR_4

Interpro

IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt       
IPR025875   Leu-rich_rpt_4       
IPR002048   EF_hand_dom       
IPR011992   EF-hand-dom_pair       
IPR018247   EF_Hand_1_Ca_BS       
IPR003603   U2A'_phosphoprotein32A_C       

SUPFAM

SSF47473   SSF47473       

Gene 3D

3.80.10.10    

ProteinModelPortal

A0A2H1WYB6   A0A1E1W7K2   A0A212ERH2   A0A2W1BAM8   A0A0N1IPA3   A0A194Q7S0   + More
A0A0L7LKZ7   D6WCN2   A0A1Y1K368   A0A1Y1K382   A0A1Y1K602   A0A1Y1K381   A0A088AE25   A0A2A3ESP0   A0A232F2S0   K7JWV6   A0A0L7R294   A0A154PJK0   E2BCE1   A0A226EU92   E2ADZ4   A0A1B6DQM7   E2BCE0   U4U1F2   J3JZ65   N6TDB6   N6T681   A0A182JMS7   A0A2M4D0R6   A0A023ENQ7   A0A023ELS6   A0A182MTQ8   A0A023ELR2   A0A182GPB5   A0A1Q3EVN9   A0A1Q3EVP3   A0A1Q3EVQ9   R4WDU4  

PDB

6FF7     E-value=0.0129472,     Score=88

KEGG

101742039    no KO assigned | (RefSeq) leucine-rich repeat-containing protein C10orf11-like

GO

GO:0005509   GO:0005515   GO:0006979   GO:0020037   GO:0046983   GO:0003676   GO:0016020   GO:0005634   GO:0006270   GO:0042555   GO:0048384  

Length:

254

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0840399999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.16207

outside

1  -  254

 

 

Pi

171.346611

Theta

195.568132

Tajima's D

-0.690261

CLR

107.816569

CSRT

0.20053997300135

Interpretation

Uncertain