Silkworm Genome Informatics Database

Gene

KWMTBOMO03263

Pre Gene Modal

BGIBMGA013609

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_cell_division_cycle_protein_16_homolog_[Bombyx_mori]

Location

Bomo_Chr6(-):2584535-2594026 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.286 Mitochondrial Reliability : 1.096

CDS

ATGGCAAAACCCGCTACCACTGGTAGAAGTAGCACAGACGAATTTATGAATATCGATCTCATGAGGTCTCTTGTAAAGCAATATTCGGAATTGGGACAGTGGACCAGTGCTTTCTTTTGGGCTGATGCTGCAGCCGCTGCAGCAGGGGGTGGCCCCGAAGGCCCAAGTGGTGATGATATGTGGCTTCTTGCTAGTGCCATGCTAGCTCGAGGGGAACTCCACAGAGCTGCTGAAGTTGTCACTTCTAGGAATTTACATAAACGACACCTGCTGTGCTTAGGGGTGGCGATGCGTGCACATTTGGCAGCCAAGGAATCCTCAACAGCTCTTAATTTACTGGAGGATTGTGATCCTATGCTGCTTGAACCTAGAAACACTGACCAAACTCACAATAGGGCTCTAGCCGGGGTTTTAGTGACACAAGCGCGAGCGTTATCCGCTCTGGAGCGACGCGAGGCGGCCGCCGAGGCGCTGACCGCGGCCCTACGGGCGGACTGTGCCTGCTACGAAGCACTAGACCTGTTGCTTGAGCAACACGCGCTCACACCCAGGCAGGAAAGCGAGTTAATAGAGTCGTTACCGATTAGCGAACAGTTGAGTGGAGCTGAGGGCGCGTTGTTACTGTCCGCGTACAGAGAGCGGTTTCACCGCTACTCGCCCGCGCCCGTCGCGCCGCCGCCGCCCGACAGCGATGACCCCATAGTTCGCGAGGCGGAGGGCGTGAGGTCCCGCACGCTGGAGGCGGCGGTGTGCGGGGCGCGGCGGCTGGCCGCGGGGTGCCGGTGGGGGGCCGCCCTCGAGCGGCTGGGGGCTGCGGGTGGGGGCCCGGGGTCCGGCGCTGCCCTGCGAGCCGCCTGCCTCCTCGAGCTGAGACGAGCCCCGGAACTCTTCGCGTTCGCACACGGACTTGTGGACGCCTACCCCACGCACTGGACAGCTTGGTATGCCGTGGGCTGCTACTACTATCTTATAGGCAAGAATGAATTGGCCCGTCGATATCTTAGTAAGTCGAAGAGTCTGGAGCCTGGCGCCGGCTGCGTGTGGCTCGCCTACGGGCACAGCTTCGCGGCCGACAACGAGCACGACCAGGCCATGGCGGCCTACTTCAAGGCCAGTCAGCTGATGGGCGGCTGCCACCTCCCCCCCTTGTACGTGGGGGTGGAGTGCTCCCTTCTGAACAACGTGGCGATGTGCGAACGCTTCCTGTACAAGGCCGCCGTGCTGCACCGCGGCGCTACCGAGGCCGGGAGTGCGGTGGACGAGGGGGACGTGGAGAACAAGAGCGGCTGGGATCGCATCCTGGGGCTGGTCAGCGACCCTCACGTGGCGCACGAGGCGGGGGCCGCGGCGCTGGCCGCCGGGGACCCCGGGGCCGCCAGGCTGCTGTGGCTCAGGACCTTGGATGTGGCGGCTCACGATGGACAGTTGAATGTACGCTGGGCGGCGACCCTGGACGGGCTGGGCCACGCGTCCCGCGCGCTGGGCGGCGCGGCGGAGGGCCTGCAGTGGCACGAGCGGGCGCTGGGCCTGCGCCCCCGCCGCGGCGCCTCGCACACGGCGCGGGGGCTGTGCCTGGCGCTGCTGGGCCGGGCCGCGGCGGCCGCGGACGCGCTGCACGGCGCGCTGGCGCTGGACCCGGACGACGTGGTGGCGCTGGCGCTGCTCGACCTGGTCGTGGACACGCTCGACCGACACCTCGCAGAAGAAGAGATCCCACAGTTCCCGTTCCCAGCGGTGAACATATCGCTACCGGCCGCGCCCGCGACTCCGCTCGCTTCCGTCGACGTCACCAACACCTCCGACATGAGCATGAGCTTCGATTAA

Protein

MAKPATTGRSSTDEFMNIDLMRSLVKQYSELGQWTSAFFWADAAAAAAGGGPEGPSGDDMWLLASAMLARGELHRAAEVVTSRNLHKRHLLCLGVAMRAHLAAKESSTALNLLEDCDPMLLEPRNTDQTHNRALAGVLVTQARALSALERREAAAEALTAALRADCACYEALDLLLEQHALTPRQESELIESLPISEQLSGAEGALLLSAYRERFHRYSPAPVAPPPPDSDDPIVREAEGVRSRTLEAAVCGARRLAAGCRWGAALERLGAAGGGPGSGAALRAACLLELRRAPELFAFAHGLVDAYPTHWTAWYAVGCYYYLIGKNELARRYLSKSKSLEPGAGCVWLAYGHSFAADNEHDQAMAAYFKASQLMGGCHLPPLYVGVECSLLNNVAMCERFLYKAAVLHRGATEAGSAVDEGDVENKSGWDRILGLVSDPHVAHEAGAAALAAGDPGAARLLWLRTLDVAAHDGQLNVRWAATLDGLGHASRALGGAAEGLQWHERALGLRPRRGASHTARGLCLALLGRAAAAADALHGALALDPDDVVALALLDLVVDTLDRHLAEEEIPQFPFPAVNISLPAAPATPLASVDVTNTSDMSMSFD

Uniprot

A0A212EM96 A0A212EXC2 A0A2A4JKM6 A0A2W1BMF6 U3IY24 V9KN77 + More

Pubmed

22118469 28756777 23749191 24402279

EMBL

AGBW02013858 OWR42612.1 AGBW02011786 OWR46148.1 NWSH01001169 PCG72278.1 + More
KZ150071 PZC74056.1 ADON01087463 JW867189 AFO99706.1

Proteomes

UP000007151 UP000218220 UP000016666

Pfam

PF13181 TPR_8

Interpro

IPR013026   TPR-contain_dom        + More
IPR011990   TPR-like_helical_dom_sf
IPR019734   TPR_repeat

SUPFAM

SSF48452 SSF48452

Gene 3D

1.25.40.10

ProteinModelPortal

A0A212EM96 A0A212EXC2 A0A2A4JKM6 A0A2W1BMF6 U3IY24 V9KN77 + More

PDB

3HYM E-value=1.1734e-37, Score=395

KEGG

101742010 K03353 anaphase-promoting complex subunit 6 | (RefSeq) cell division cycle protein 16 homolog

PATHWAY

04120 Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0051301 GO:0005813 GO:0070979 GO:0005680 GO:0005876 GO:0005737 GO:0005515 GO:0000166 GO:0015031 GO:0006886 GO:0016192 GO:0030117 GO:0005634 GO:0006270 GO:0042555 GO:0048384

Length:

607

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.571219999999999

Exp number, first 60 AAs:

0.03426

Total prob of N-in:

0.00461

outside

1 - 607

Pi

150.451815

Theta

144.111105

Tajima's D

-1.519558

CLR

0.654882

CSRT

0.0609469526523674

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics