Silkworm Genome Informatics Database

Gene

KWMTBOMO03262

Pre Gene Modal

BGIBMGA013604

Annotation

PREDICTED:_cytoplasmic_polyadenylation_element-binding_protein_1_[Amyelois_transitella]

Location

Bomo_Chr6(+):2576107-2581534 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.84

CDS

ATGCCGCTGTTACATCAAGACGTTAATCGCGGCGGGAGCTCTAATGAAAATAGACGCTCATTTGCAGACTTTCTTGGCTTCGACTCTAGTTCTCTCGTAGAGTCTGTCGCTACACCTCGACATCGGCATAATGAGTACCGTGGTGAAAACACATGGCGGTGGGAAGAGCCTCGCAGTCCGGAGGTGGCCCAGAGCCCCAGGTCTCTCGTGCCGCCTGCTTGTTTCCCGCCACGTCATCCACGTGCGTTCACGAGCTACAGCGAATCCGCTCAGCCTGGTGCGGAGTGGAACCACGACGAGTCTTCATCGCGAGATATTGTAGACCTCGTAGCGTCCTTGGCGTTAACGTTGCCGTCTCCGTCACCTCGCTCCATGTTGTCGGTGCCGCCGCCAGGCCGCCTCAGCTACGATCACCTCGAACAGATCATGGAGCCATCTTGGTCTGATCAAATGGGTTCTGCTTCGGCACGGGAGACCCGCATGCAACTTGCCCAGAGGCGCGCGTCATTTTGTGGAACCAGTTCAAACCATGGATCTGGCGCGGTAGTATGGAGTGGAACTCTGCCGGCTCGTGCCCCGGATCCTAACGCTGTATACTCGCCGAAGGTGTTCCTTGGCGGGCTGCCCTGGGACATCACCGAGCACGCCCTGATGCACACACTAAGGCATTTCCACCCGGTCTGTGTGGAGTGGCCAGGCCGCGAGTTCGGCGGCACCGCGCCCCGCGGGTTCGCCTACGTGACTCTGGAAAGCGAGCGTCGCGTGCGCGAGCTGCTATCAGCTAGTCGATGCGACGGACGAGACTGGTATTACCGGATCACTTCCAGGAAAATGCGCACAAAGGAAGTGCAAGTGATCCCGTGGTCGGTGAGTGGCGCGAGCTGGGTGCGCGGGGCGAGCGCCCGGCTGGCGGCGCGCCGCACGGTGTTCGTGGGCGCGCTGCACGGCTGTCTCTCCGCCGCCGCACTCGCCACCGTCATGGACGACCTCTTCGCGGGCGTTGTGTACGCAGGCATTGACACTGACAAAAACAAATATCCGATCGGCTCGGGACGAGTGACATTCGACAACGTGCGATCGTACGTTCGCGCGATATCTGCTGCCTACGTCGAGATACGCACTGATAAATTCACTAAAAAGGTACAAGTGGACCCGTATCTGGAAGATTCGATGTGTTCAGTATGCAACCTGCAACAGGGTCCCTACTTTTGCCGTGAACCGACATGCTTTGGCTACTTCTGCCGTTCGTGCTGGTCTTGGCAACACAGCACGGAGCAACACAAACCGTTGATGCGGAGCAGCAAAAACAATAATCGTCAGTCGCCGCCGAGCGACAACGCCCCGGCATACAACAGTGCCTCTTCTAACGGGACTCCGTCGCCGTCCACGAGCGGTACCAGCGAGCACGAACACTCTGAAAACGTCTGGCCTCCACACTAA

Protein

MPLLHQDVNRGGSSNENRRSFADFLGFDSSSLVESVATPRHRHNEYRGENTWRWEEPRSPEVAQSPRSLVPPACFPPRHPRAFTSYSESAQPGAEWNHDESSSRDIVDLVASLALTLPSPSPRSMLSVPPPGRLSYDHLEQIMEPSWSDQMGSASARETRMQLAQRRASFCGTSSNHGSGAVVWSGTLPARAPDPNAVYSPKVFLGGLPWDITEHALMHTLRHFHPVCVEWPGREFGGTAPRGFAYVTLESERRVRELLSASRCDGRDWYYRITSRKMRTKEVQVIPWSVSGASWVRGASARLAARRTVFVGALHGCLSAAALATVMDDLFAGVVYAGIDTDKNKYPIGSGRVTFDNVRSYVRAISAAYVEIRTDKFTKKVQVDPYLEDSMCSVCNLQQGPYFCREPTCFGYFCRSCWSWQHSTEQHKPLMRSSKNNNRQSPPSDNAPAYNSASSNGTPSPSTSGTSEHEHSENVWPPH

Uniprot

A0A2W1BK23 A0A2A4JLJ0 A0A2A4JKC9 A0A2H1WUV8 A0A194Q383

Pubmed

28756777 26354079

EMBL

KZ150071 PZC74055.1 NWSH01001169 PCG72280.1 PCG72279.1 ODYU01011230 + More
SOQ56843.1 KQ459579 KPI99464.1

Proteomes

UP000218220 UP000053268

Pfam

PF16367 RRM_7 + More
PF16366 CEBP_ZZ

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR034819   CPEB
IPR038446   CEBP_ZZ_sf
IPR032296   CEBP_ZZ
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.40.130 3.30.70.330

ProteinModelPortal

A0A2W1BK23 A0A2A4JLJ0 A0A2A4JKC9 A0A2H1WUV8 A0A194Q383

PDB

2MKH E-value=4.54863e-65, Score=630

KEGG

101742152 K02602 cytoplasmic polyadenylation element-binding protein | (RefSeq) cytoplasmic polyadenylation el

PATHWAY

04320 Dorso-ventral axis formation - Bombyx mori (domestic silkworm)

GO

GO:0045182 GO:0003730 GO:0003676 GO:0000166 GO:0015031 GO:0006886 GO:0016192 GO:0030117 GO:0005634 GO:0006270 GO:0042555 GO:0048384

PANTHER

PTHR12566

Length:

479

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.54071

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.01645

outside

1 - 479

Pi

189.246379

Theta

207.714502

Tajima's D

-0.508753

CLR

0.343529

CSRT

0.24118794060297

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics