Gene

KWMTBOMO03251  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013598

Annotation

PREDICTED:_AP-1_complex_subunit_sigma-2_isoform_X2_[Plutella_xylostella]

Location

Bomo_Chr6(+):2461277-2470209      View in EpiBrowser

Full name

AP complex subunit sigma      

Location in the cell

Cytoplasmic   Reliability : 1.573 Golgi   Reliability : 1.131

CDS

ATGATGCAGTTTATGCTATTATTTAGCCGTCAAGGCAAATTGAGGCTTCAGAAGTGGTACGTGGCTCATCCAGATAAGCTAAAGAAGAAAATAACTAGAGAATTGATTACCACAGTGCTAGCTCGAAAACCCAAAATGTGTTCTTTCCTTGAATGGAAAGATGTTAAAGTTGTGTATAAAAGATATGCATCACTATATTTCTGCTGTGCTATGGAACAAGAAGACAATGAGCTGCTGACCTTGGAGTTGATCCATCGCTATGTAGAACTGCTGGACAAGTATTTTGGCAGTGTTTGTGAACTGGACATCATCTTTAACTTTGAGAAAGCATACTTCATACTTGATGAACTGGTTCTTGGTGGAGAGCTACAAGAAACCAGTAAGAAGAATGTCCTGAAAGCCATCGCTGCCCAGGATCTTCTGCAGGAGGAGGAGACACCGCAGGGCTTCTTCGAAGACCACGGCCTCGGATAA

Protein

MMQFMLLFSRQGKLRLQKWYVAHPDKLKKKITRELITTVLARKPKMCSFLEWKDVKVVYKRYASLYFCCAMEQEDNELLTLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDELVLGGELQETSKKNVLKAIAAQDLLQEEETPQGFFEDHGLG

Similarity

Belongs to the adaptor complexes small subunit family.

Feature

chain  AP complex subunit sigma

Uniprot

A0A2W1BGV6   A0A1E1WES3   Q2F5U0   A0A212EM28   A0A1B6ECU6   A0A1Y1L6K7   + More
A0A0T6BGV2   A0A1S3DCN4   A0A1Y1L365   V9ID69   E2ACP9   A0A3L8DBF2   A0A1B6GGE6   A0A293MVQ7   A0A087TIH9   A0A1E1XJY2   A0A1E1X0U2   D6WD27   J3JU90   L7M339   A0A154NWD7   K7J0N4   A0A0M8ZXP9   A0A158P3M2   A0A1B6KLT0   A0A146L2I4   A0A1Q3G3A0   Q17MI7   D1FQ10   U5EWK2   A0A0K8RIZ9   A0A2L2Y7R0   A0A1D2MBX0   J9K426   A0A1L8DVX1   A0A2H8TYJ3   A0A2S2QZR5   A0A0L8FH31   A0A1B0CQ08   K1PU11   A0A1S3I1J8   A0A2A3EPS6   A0A2M4CU87   A0A2M4C217   A0A182ND36   F5HLJ6   A0A182FR30   D3TQF6   A0A0K8UMB1   A0A034W3P0   V3ZV51   A0A0L0C7K9   T1PAD7   C4N170   A0A1L8EB84   A0A1I8PS45   A0A1W4UKB4   A0A3B0JQT1   Q298M4   B4G4B6   B4PL44   B3M313   B4N9E5   Q9VCF4   A0A1E1W4B9   B4M0G7   B4K6U6   A0A0M4ESQ2   A0A131XW95   I6WHE4   B4QSD8   B4HG13   B3P8B4   A0A0P6I3U8   A0A0P6B4D9   B4JT85   A0A0N1PJ42   Q9GQM8   A0A158QBG9   A0A182E4D6   A0A1B6CCP1   A0A183XFD6   A0A2H1W2Z7   A0A0M3IN99   F1LHA0   S4P3U1   A0A1S3DBC7   A0A0R3RVP7   A0A1S0U2C4   A0A0J9XRQ0   A0A0R3Q4S4   A0A1E1WAE4   A0A222AJE1   A0A139WMJ9   A0A1Y1L5E3   G0MXN1   A0A2G5TJZ2   O16369   A0A0B2VNX0   I6VE66  

Pubmed

28756777    22118469    28004739    20798317    30249741    29209593    + More
28503490    18362917    19820115    22516182    23537049    25576852    20075255    21347285    26823975    17510324    26561354    27289101    22992520    12364791    14747013    17210077    20353571    25348373    23254933    26108605    25315136    19576987    15632085    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26354079    10954086    22919073    26850696    21685128    23622113    17885136    9851916   

EMBL

KZ150071    PZC74048.1    GDQN01005637    JAT85417.1    DQ311333    JQ824197    + More
ABD36277.1    AFN25811.1    AGBW02013960    OWR42511.1    GEDC01031524    GEDC01001555    JAS05774.1    JAS35743.1    GEZM01066281    JAV68010.1    LJIG01000418    KRT86522.1    GEZM01066279    GEZM01066277    JAV68014.1    JR038824    AEY58426.1    GL438568    EFN68793.1    QOIP01000010    RLU17835.1    GECZ01008406    JAS61363.1    GFWV01019313    MAA44041.1    KK115358    KFM64918.1    GFAA01003807    JAT99627.1    GFAC01006298    JAT92890.1    KQ971312    EEZ98327.1    APGK01020369    BT126803    KB740193    KB631602    AEE61765.1    ENN81149.1    ERL84545.1    GACK01006298    JAA58736.1    KQ434773    KZC03986.1    KQ435801    KOX73250.1    ADTU01008261    ADTU01008262    GEBQ01027565    JAT12412.1    GDHC01017222    JAQ01407.1    GFDL01000765    JAV34280.1    CH477205    EAT47937.1    EZ419910    ACZ28265.1    GANO01001379    JAB58492.1    GADI01003309    JAA70499.1    IAAA01009710    LAA04188.1    LJIJ01002000    ODM90384.1    ABLF02020332    GFDF01003515    JAV10569.1    GFXV01007165    MBW18970.1    GGMS01013961    MBY83164.1    KQ431871    KOF63003.1    AJWK01022902    AJWK01022903    AJWK01022904    AJWK01022905    JH818022    EKC27782.1    KZ288197    PBC33717.1    GGFL01004230    MBW68408.1    GGFJ01010194    MBW59335.1    AAAB01008898    EGK97129.1    EZ423658    ADD19934.1    GDHF01024809    JAI27505.1    GAKP01010554    JAC48398.1    KB203083    ESO86445.1    JRES01000809    KNC28241.1    KA645697    AFP60326.1    EZ048843    ACN69135.1    GFDG01002986    JAV15813.1    OUUW01000007    SPP82752.1    CM000070    EAL27931.2    CH479179    EDW24464.1    CM000160    EDW99029.2    CH902617    EDV42413.2    CH964232    EDW80578.2    AE014297    AY061172    KX531465    AAF56212.2    AAL28720.1    ANY27275.1    GDQN01009323    JAT81731.1    CH940650    EDW68346.2    CH933806    EDW14212.1    CP012526    ALC47810.1    GEFM01004497    JAP71299.1    JQ824199    AFN25813.1    CM000364    EDX14137.1    CH480815    EDW43406.1    CH954182    EDV53938.1    GDIQ01026458    JAN68279.1    GDIP01020235    JAM83480.1    CH916373    EDV94975.1    KQ460650    KPJ13133.1    AF228054    AAG43051.1    UXUI01009904    VDD94484.1    UYRW01000489    VDK67262.1    GEDC01026107    JAS11191.1    UYWW01000080    VDM07176.1    ODYU01005868    SOQ47192.1    JI219945    ADY49504.1    GAIX01006294    JAA86266.1    JH712310    EFO23363.1    LN856891    CDP93665.1    UZAG01000402    VDO08269.1    GDQN01007139    JAT83915.1    KY563925    KY609774    ASO76371.1    ASO76489.1    KYB29045.1    GEZM01066280    JAV68011.1    GL379819    EGT47188.1    PDUG01000005    PIC27553.1    BX284605    CCD64132.1    JPKZ01001231    UYWY01024532    KHN83074.1    VDM48853.1    JQ824198    AFN25812.1   

Proteomes

UP000007151    UP000079169    UP000000311    UP000279307    UP000054359    UP000007266    + More
UP000019118    UP000030742    UP000076502    UP000002358    UP000053105    UP000005205    UP000008820    UP000094527    UP000007819    UP000053454    UP000092461    UP000005408    UP000085678    UP000242457    UP000075884    UP000007062    UP000069272    UP000030746    UP000037069    UP000095301    UP000095300    UP000192221    UP000268350    UP000001819    UP000008744    UP000002282    UP000007801    UP000007798    UP000000803    UP000008792    UP000009192    UP000092553    UP000000304    UP000001292    UP000008711    UP000001070    UP000053240    UP000038041    UP000274131    UP000077448    UP000271087    UP000093561    UP000270924    UP000036681    UP000050640    UP000006672    UP000050602    UP000008068    UP000230233    UP000001940    UP000031036    UP000050794    UP000267007   

PRIDE

Q2F5U0    L7M339    Q9VCF4    I6WHE4    Q9GQM8    I6VE66    + More

Pfam

PF01217   Clat_adaptor_s        + More
PF08368   FAST_2

Interpro

IPR011012   Longin-like_dom_sf        + More
IPR000804   Clathrin_sm-chain_CS       
IPR016635   AP_complex_ssu       
IPR022775   AP_mu_sigma_su       
IPR013579   FAST_2       

SUPFAM

SSF64356   SSF64356       

ProteinModelPortal

A0A2W1BGV6   A0A1E1WES3   Q2F5U0   A0A212EM28   A0A1B6ECU6   A0A1Y1L6K7   + More
A0A0T6BGV2   A0A1S3DCN4   A0A1Y1L365   V9ID69   E2ACP9   A0A3L8DBF2   A0A1B6GGE6   A0A293MVQ7   A0A087TIH9   A0A1E1XJY2   A0A1E1X0U2   D6WD27   J3JU90   L7M339   A0A154NWD7   K7J0N4   A0A0M8ZXP9   A0A158P3M2   A0A1B6KLT0   A0A146L2I4   A0A1Q3G3A0   Q17MI7   D1FQ10   U5EWK2   A0A0K8RIZ9   A0A2L2Y7R0   A0A1D2MBX0   J9K426   A0A1L8DVX1   A0A2H8TYJ3   A0A2S2QZR5   A0A0L8FH31   A0A1B0CQ08   K1PU11   A0A1S3I1J8   A0A2A3EPS6   A0A2M4CU87   A0A2M4C217   A0A182ND36   F5HLJ6   A0A182FR30   D3TQF6   A0A0K8UMB1   A0A034W3P0   V3ZV51   A0A0L0C7K9   T1PAD7   C4N170   A0A1L8EB84   A0A1I8PS45   A0A1W4UKB4   A0A3B0JQT1   Q298M4   B4G4B6   B4PL44   B3M313   B4N9E5   Q9VCF4   A0A1E1W4B9   B4M0G7   B4K6U6   A0A0M4ESQ2   A0A131XW95   I6WHE4   B4QSD8   B4HG13   B3P8B4   A0A0P6I3U8   A0A0P6B4D9   B4JT85   A0A0N1PJ42   Q9GQM8   A0A158QBG9   A0A182E4D6   A0A1B6CCP1   A0A183XFD6   A0A2H1W2Z7   A0A0M3IN99   F1LHA0   S4P3U1   A0A1S3DBC7   A0A0R3RVP7   A0A1S0U2C4   A0A0J9XRQ0   A0A0R3Q4S4   A0A1E1WAE4   A0A222AJE1   A0A139WMJ9   A0A1Y1L5E3   G0MXN1   A0A2G5TJZ2   O16369   A0A0B2VNX0   I6VE66  

PDB

1W63     E-value=1.22454e-61,     Score=594

KEGG

692921    K12394 AP-1 complex subunit sigma 1/2 | (RefSeq) AP1S; adaptin

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0006886   GO:0030117   GO:0016192   GO:0005623   GO:0016020   GO:0043231   GO:0030121   GO:0042051   GO:0007411   GO:0008565   GO:0030276   GO:0048749   GO:0046907   GO:0016021   GO:0045176   GO:0006810   GO:0015031   GO:0005634   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR11753  

Length:

157

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00045

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03429

outside

1  -  157

 

 

Pi

240.55019

Theta

206.108096

Tajima's D

1.015168

CLR

0.002878

CSRT

0.658817059147043

Interpretation

Uncertain