SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03250
Pre Gene Modal
BGIBMGA013613
Annotation
putative_F-box_only_protein_9_[Danaus_plexippus]
Full name
F-box only protein 9      
Location in the cell
Nuclear   Reliability : 2.807
 

Sequence

CDS
ATGGCATCAGGACATGGTGAGACTAGCAGCGAGTGTGAAGGCGAGGAGCAAGAAGACTCTTCTTCGTCTCATTCTAATAATGTGCTTGAAGCTTGCAATACTCTTGACAATTTGAGTTTACAAGACAATGCGCAAAATACAAATCACGGTGAAGATGAGCTTTCAGTCTTCCGGCAGCAGTGGCAGAGAGAACTCGAATCAACACCGACAACACAGAAAGGATCAAAGCTTGAAGAATCATTTGCAGAACCACTCACTGATGAGGATAAGGCTAAGCAACTGTTCCTCCGTGGCGTTGAATTCGAGCGCGGGGGGAAGTTGTATGAAGCTATACAACATTACAAGCGAGCCATACAGATCGTACCGGACGTCGAGACGCGGCTGTACGAGGGAAGCGAGCTCAGGGGAGATACGCCGGAAGATTCAGAGGTGGAGGAAGAGGTTTGCGCGGACAAGGCTCCTCCCTCCGAGGATGAGGACGAGGAGGTCGTGGAGGGGGAGGAACTGCTTGCGAGGCTGCAACGAATTCTAGCTAGGAGGGGCTTGCTGTGTGAACCGAAACTACCCACGGTGTCGGCGCACATATCGTGGCTCCCGTACGAGGTGTTGCTGGTGGTGCTGCGCTGGGTGGTGAGCTCGGAGCTGGACGCGGGCGCGCTGGAGGCGGCGGCCGGCGTGTGCCGCGGCTGGTACGTGGCCGCCCGGGAGCCCGACCTCTGGCGCTCCATCTGCGTCAGAACATGGGGCATAGAGTGCGGCACCCCCCGCGCTAACGGCTGGTCGAGCTGGCGCGACATGTACATCGCGCGTCCCCGGCTGCGACTCAACGGCTGCTACATCAGCAAGACCACGTACCTGCGCCACGGGGAGAACTCCTTCCAGGACCAGTTCTACAGGCCGTGGTATCTTATTTACTACTACAGGTACCTCAGGTGA
Protein
MASGHGETSSECEGEEQEDSSSSHSNNVLEACNTLDNLSLQDNAQNTNHGEDELSVFRQQWQRELESTPTTQKGSKLEESFAEPLTDEDKAKQLFLRGVEFERGGKLYEAIQHYKRAIQIVPDVETRLYEGSELRGDTPEDSEVEEEVCADKAPPSEDEDEEVVEGEELLARLQRILARRGLLCEPKLPTVSAHISWLPYEVLLVVLRWVVSSELDAGALEAAAGVCRGWYVAAREPDLWRSICVRTWGIECGTPRANGWSSWRDMYIARPRLRLNGCYISKTTYLRHGENSFQDQFYRPWYLIYYYRYLR

Summary

Description
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of TTI1 and TELO2 in a CK2-dependent manner, thereby directly regulating mTOR signaling. SCF(FBXO9) recognizes and binds mTORC1-bound TTI1 and TELO2 when they are phosphorylated by CK2 following growth factor deprivation, leading to their degradation. In contrast, the SCF(FBXO9) does not mediate ubiquitination of TTI1 and TELO2 when they are part of the mTORC2 complex. As a consequence, mTORC1 is inactivated to restrain cell growth and protein translation, while mTORC2 is activated due to the relief of feedback inhibition by mTORC1 (By similarity).
Subunit
Part of the SCF (SKP1-CUL1-F-box) E3 ubiquitin-protein ligase complex SCF(FBXO9) composed of CUL1, SKP1, RBX1 and FBXO9. Interacts with TTI1 and TELO2; when TTI1 and TELO2 are phosphorylated by CK2 (By similarity).
Keywords
Complete proteome   Cytoplasm   Phosphoprotein   Reference proteome   TPR repeat   Ubl conjugation pathway  
Feature
chain  F-box only protein 9
EMBL
BABH01032321    GDQN01005074    JAT85980.1    KQ460542    KPJ14108.1    KQ459579    + More
KPI99476.1    AGBW02013960    OWR42512.1    NWSH01002255    PCG68791.1    ODYU01005868    SOQ47190.1    GBYB01005606    JAG75373.1    GBYB01002851    JAG72618.1    GEDC01007825    JAS29473.1    GECZ01012080    JAS57689.1    NNAY01001934    OXU22511.1    KK853353    KDR08236.1    KK107681    EZA48079.1    QOIP01000006    RLU21839.1    KQ435698    KOX80713.1    LBMM01000270    KMR02240.1    GL451202    EFN79726.1    KQ977793    KYM99673.1    ADTU01015190    KQ414915    KOC59484.1    KQ434851    KZC08618.1    GL764074    EFZ18613.1    GL440813    EFN65364.1    KQ982294    KYQ58188.1    KQ765373    OAD53955.1    KQ980107    KYN17670.1    GBHO01027334    GDHC01005441    JAG16270.1    JAQ13188.1    GALX01002035    JAB66431.1    GL888480    EGI60297.1    KQ971380    EEZ97671.2    KQ981625    KYN39097.1    ACPB03014809    KZ288357    PBC27101.1    DS232242    EDS38277.1    LJIG01016240    KRT81194.1    GFDL01007826    JAV27219.1    GEMB01001406    JAS01750.1    AJWK01023229    AJWK01023230    GANO01000241    JAB59630.1    KB632375    ERL94039.1    GFDF01010391    JAV03693.1    GFDF01009874    JAV04210.1    AXCM01015948    ADMH02001849    ETN60888.1    AAAB01008807    EAA04165.3    CH477317    EAT43750.1    APCN01003602    GGFM01002659    MBW23410.1    DS235088    EEB11637.1    GGFM01002681    MBW23432.1    ATLV01024541    KE525352    KFB51588.1    AXCN02000573    AJVK01019082    AJVK01019083    GGFJ01007439    MBW56580.1    GL732535    EFX84272.1    GAMD01000834    JAB00757.1    GDAI01000932    JAI16671.1    BT045283    ACI33545.1    GAPW01001368    JAC12230.1    BC085831    GAPW01001367    JAC12231.1    JARO02003579    KPP70214.1    GGFM01007025    MBW27776.1    GDKW01002543    JAI54052.1    GAPW01000898    JAC12700.1    JXUM01111220    KQ565482    KXJ70920.1    UFQT01000550    SSX25185.1    GFFW01001527    JAV43261.1   
Pfam
PF12937   F-box-like        + More
PF00646   F-box
Interpro
IPR019734   TPR_repeat        + More
IPR001810   F-box_dom       
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR036047   F-box-like_dom_sf       
IPR036181   MIT_dom_sf       
SUPFAM
SSF81383   SSF81383        + More
SSF48452   SSF48452       
SSF116846   SSF116846       
Gene 3D

Ontologies

Topology

Subcellular location
Cytoplasm  
Length:
311
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04184
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02683
outside
1  -  311
 
 

Population Genetic Test Statistics

Pi
213.407513
Theta
152.14746
Tajima's D
0.7774
CLR
0.179774
CSRT
0.5965201739913
Interpretation
Uncertain
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