Gene

KWMTBOMO03247

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr6(-):2412822-2414766      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.944

CDS

ATGACAGTTAAAAAAAGGAAAAGGGTTTTGTCGGCGATGCCCCATTCCACATTTAATGTGGATTTCAGCAATGTAAGGGGCCTACATAGTAACCTCGACGCCGTACACCACCATCTTGAGACGGCGCAGCCTGCCCTCCTTTTTCTGACGGAGACACAGATATCTGCTCCGGATGACACTTCGTACCTTGAATACCCCGGCTACGTATTGGAGCACAACTTCCTGCGTAAAGCCGGGGTGTGTGTATTCGTCCGGGCTGATGTCTGTTGTCGCCGTCTACGAGGCCTCGAACAACGGGACCTGTCCATCTTGTGGCTGCGCGTAGATCACGGGGGTTGTACCCGAGTCTACGCGTGCCTGTACAGGTCCCACAGCAGTGATGCAGGTTCAGCTCTGATAGAGCATGTGCAAGAGGGGACTAACCGCGTGCTTGAGCAGTACCCATCTGCGGAGGTGGTGGTTCTTGGAGACTTTAACGCTCACCACCAAGAGTGGTTGGGGTCCAGAACCACTGACCTCCCGGGTCGGGCTGCCTACGATTTCGCCCTGGCCTACGGCTTCTCCCAGCTGGTGACAGAGCCCACCCGTGTCCCAGATATTGAGGGGCACGAGCCCTCTCTGTTGGACCTTCTGCTGACCACCGATCCAGCCGGATACAGTGTGGTGGTCGACGCTCCACTTGGATCGTCTGATCACTGCCTTATCCGTGCTGCGGTACCGATCTCTCGTCCTGGTCGTCGAATGATGACCGGGTATCGAAGAGTTTGGCGGTATATGTCAGCAGATTGGGATGGGTTGCGTGAATTTTACGCATCCTACCCATGGGGGCGGCTCTGCTTTTCCTCTGGTGATCCTGACGTCTGTGCGGACCGACTTAAAAACGTGGTGCTTCGGGGGATGGAACTGTTCATTCCTTCTTCCGAGGTGCCCGTCGGGGGTCGCAGTGGACCCTGGTATAACAATGCCAGTCGGGACGCTGCACGCCTCAAGCGGTCCGCATACGCGGCATGGAATGATGCCAGGAGACGCCAGGATCCTAATACCTCAGAGGAAAGGCGGAAATTTAACGCCGCTTCTAGGTCCTATAAGAGGGCTATTGCCAGGGCGAAGTCGGAGCACGTTGCCAGAATTGGCGAGCGACTGAAGAGCTATCCCGCCGGGAGCCGTGCTTTCTGGTCGCTCGCTAAGGCTGCAGAAGGTAACTTCTGCAGGTCTAGTCTCCCACCACTACGCAAGTCTGATGACAGTCTGGCCCATAGTGCGAAAGAGAAGGCTGACCTTCTGGTCAAACTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACCACCGAACATCCCCCGGTGTGACAGTTCCCTGCCGGAGATCTGCTTTACACAGTGTGCAGTCAGGCGGGAACTCCGACTCCTGGACGTCCATAAGTCGAGTGGGCCGGACGGCATCCCTGCTGTGGTTCTGAAAAGGTGA

Protein

MTVKKRKRVLSAMPHSTFNVDFSNVRGLHSNLDAVHHHLETAQPALLFLTETQISAPDDTSYLEYPGYVLEHNFLRKAGVCVFVRADVCCRRLRGLEQRDLSILWLRVDHGGCTRVYACLYRSHSSDAGSALIEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSRTTDLPGRAAYDFALAYGFSQLVTEPTRVPDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAAVPISRPGRRMMTGYRRVWRYMSADWDGLREFYASYPWGRLCFSSGDPDVCADRLKNVVLRGMELFIPSSEVPVGGRSGPWYNNASRDAARLKRSAYAAWNDARRRQDPNTSEERRKFNAASRSYKRAIARAKSEHVARIGERLKSYPAGSRAFWSLAKAAEGNFCRSSLPPLRKSDDSLAHSAKEKADLLVKLFASNSTVDDGGATPPNIPRCDSSLPEICFTQCAVRRELRLLDVHKSSGPDGIPAVVLKR

Uniprot

Q6UV17   A0A3D5S1K1   T2M4I6   A0A2H9T4N9   A0A0P4VPK5   A0A0P4VVV8   + More
W4YYU9   A0A2H9T4U7   A0A147BMN4   A0A147BMW1   A0A2H9T3K2   D6WYM1   W4XUR2   D7GYL9   A0A147BIC7   A0A0P4VX79   W4YEI4   Q8WS60   A0A354GIR8   A0A2H9T4F1   W4YYW9   A0A2H2IW73   W4YXS6   A0A2H9T441   A0A147BBB4   A0A2B4RAD6   A0A2B4RBK9   D6WYM3   A0A2H9T4Y4   W4YK32   A0A2H9T462   A0A2H9T5P0   A0A2B4RB46   D6WYM2   A0A2B4RCD2   A0A2B4S7G9   A0A2B4R707   A0A210QEX7   A0A147BJ61   A0A147BQS9   A0A2B4RML3   A0A2B4R7V5   A0A131XUP0   A0A2B4RWS1   W4Z6B2   A0A0X3PTK8   A0A147BJG7   A0A131Y4U2   A0A147BLG6   A0A147BJJ5   E3MBS8   W4Y4X9   A0A147BNC9   A0A2B4SQF8   A0A1E1XH11   A0A2B4R4J4   A0A2B4SCV9   A0A2B4RDR7   A0A147BQ97   W4Z6B0   D7ELW9   W4Z6B1   E3LJB3   A0A1E1XG83   D7GYM0   D7EM24   L7MD77   A0A147AJ39   A0A2B4T296   A0A3M0L7V8   A0A147BM11   L7LSU8   R4GDE5   A0A147BLZ0   A0A147BI04   A0A1X7VCX9   A0A147BJE7   L7MD44  

Pubmed

30148503    24065732    29150518    29652888    18362917    19820115    + More
11733140    28812685    28503490    25576852    21881562   

EMBL

AY359886    AAQ57129.1    DPOC01000269    HCX22453.1    HAAD01000593    CDG66825.1    + More
NSIT01000234    PJE78200.1    GDRN01111278    JAI56803.1    GDRN01111277    JAI56804.1    AAGJ04114595    NSIT01000225    PJE78229.1    GEGO01003370    JAR92034.1    GEGO01003274    JAR92130.1    NSIT01000383    PJE77769.1    KQ971357    EFA08424.1    AAGJ04060226    GG695857    EFA13460.1    GEGO01004865    JAR90539.1    GDRN01111326    JAI56798.1    AAGJ04103823    AH011247    AAL40415.1    DNUT01000434    HBI40906.1    NSIT01000271    PJE78081.1    AAGJ04015404    AAGJ04111627    NSIT01000300    PJE77993.1    GEGO01007351    JAR88053.1    LSMT01000899    PFX13773.1    LSMT01000767    PFX14526.1    EFA08429.1    NSIT01000218    PJE78267.1    AAGJ04029969    NSIT01000294    PJE78013.1    NSIT01000164    PJE78524.1    LSMT01000907    PFX13730.1    EFA08423.1    LSMT01000661    PFX15311.1    LSMT01000174    PFX24547.1    LSMT01001623    PFX12055.1    NEDP02004020    OWF47171.1    GEGO01004596    JAR90808.1    GEGO01002277    JAR93127.1    LSMT01000412    PFX18406.1    PFX13731.1    GEFM01005848    JAP69948.1    LSMT01000295    PFX21010.1    AAGJ04167750    GEEE01008367    JAP54858.1    GEGO01004477    JAR90927.1    GEFM01002301    JAP73495.1    GEGO01003776    JAR91628.1    GEGO01004441    JAR90963.1    DS268433    EFO97776.1    AAGJ04110620    GEGO01003111    JAR92293.1    LSMT01000046    PFX30727.1    GFAC01000857    JAT98331.1    LSMT01001965    PFX11729.1    LSMT01000121    PFX26660.1    LSMT01000769    PFX14518.1    GEGO01002473    JAR92931.1    DS497938    EFA12429.1    DS268409    EFO94840.1    GFAC01000913    JAT98275.1    EFA13459.1    DS497963    EFA12534.1    GACK01003890    JAA61144.1    GCES01007896    JAR78427.1    LSMT01000001    PFX34902.1    QRBI01000093    RMC21672.1    GEGO01003567    JAR91837.1    GACK01009888    JAA55146.1    GEGO01003594    JAR91810.1    GEGO01005479    JAR89925.1    GEGO01004518    JAR90886.1    GACK01003881    JAA61153.1   

Proteomes

UP000007110    UP000007266    UP000005237    UP000225706    UP000242188    UP000008281    + More
UP000269221    UP000001646    UP000007879   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF02460   Patched
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF00884   Sulfatase
PF12017   Tnp_P_element
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve
PF00350   Dynamin_N
PF07714   Pkinase_Tyr
PF05380   Peptidase_A17
PF00595   PDZ

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR011011   Znf_FYVE_PHD       
IPR013083   Znf_RING/FYVE/PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR017850   Alkaline_phosphatase_core_sf       
IPR000917   Sulfatase_N       
IPR024607   Sulfatase_CS       
IPR021896   Transposase_37       
IPR035983   Hect_E3_ubiquitin_ligase       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR022812   Dynamin_SF       
IPR008266   Tyr_kinase_AS       
IPR000719   Prot_kinase_dom       
IPR011009   Kinase-like_dom_sf       
IPR001245   Ser-Thr/Tyr_kinase_cat_dom       
IPR027417   P-loop_NTPase       
IPR011604   Exonuc_phg/RecB_C       
IPR008042   Retrotrans_Pao       
IPR036034   PDZ_sf       
IPR001478   PDZ       
IPR001965   Znf_PHD       

SUPFAM

SSF56219   SSF56219        + More
SSF57903   SSF57903       
SSF57667   SSF57667       
SSF53649   SSF53649       
SSF56204   SSF56204       
SSF53098   SSF53098       
SSF52540   SSF52540       
SSF56112   SSF56112       
SSF50156   SSF50156       

Gene 3D

3.60.10.10     3.30.40.10     3.40.720.10     3.30.420.10     3.90.320.10    

ProteinModelPortal

Q6UV17   A0A3D5S1K1   T2M4I6   A0A2H9T4N9   A0A0P4VPK5   A0A0P4VVV8   + More
W4YYU9   A0A2H9T4U7   A0A147BMN4   A0A147BMW1   A0A2H9T3K2   D6WYM1   W4XUR2   D7GYL9   A0A147BIC7   A0A0P4VX79   W4YEI4   Q8WS60   A0A354GIR8   A0A2H9T4F1   W4YYW9   A0A2H2IW73   W4YXS6   A0A2H9T441   A0A147BBB4   A0A2B4RAD6   A0A2B4RBK9   D6WYM3   A0A2H9T4Y4   W4YK32   A0A2H9T462   A0A2H9T5P0   A0A2B4RB46   D6WYM2   A0A2B4RCD2   A0A2B4S7G9   A0A2B4R707   A0A210QEX7   A0A147BJ61   A0A147BQS9   A0A2B4RML3   A0A2B4R7V5   A0A131XUP0   A0A2B4RWS1   W4Z6B2   A0A0X3PTK8   A0A147BJG7   A0A131Y4U2   A0A147BLG6   A0A147BJJ5   E3MBS8   W4Y4X9   A0A147BNC9   A0A2B4SQF8   A0A1E1XH11   A0A2B4R4J4   A0A2B4SCV9   A0A2B4RDR7   A0A147BQ97   W4Z6B0   D7ELW9   W4Z6B1   E3LJB3   A0A1E1XG83   D7GYM0   D7EM24   L7MD77   A0A147AJ39   A0A2B4T296   A0A3M0L7V8   A0A147BM11   L7LSU8   R4GDE5   A0A147BLZ0   A0A147BI04   A0A1X7VCX9   A0A147BJE7   L7MD44  

KEGG

101736731    no KO assigned | (RefSeq) uncharacterized LOC101736731

GO

GO:0003964   GO:0004519   GO:0016021   GO:0046872   GO:0003676   GO:0008484   GO:0004803   GO:0006313   GO:0004842   GO:0015074   GO:0004672   GO:0005524  

PANTHER

PTHR45951:SF3  

Length:

490

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0024

Exp number, first 60 AAs:

0.00021

Total prob of N-in:

0.02623

outside

1  -  490

 

 

Pi

12.673347

Theta

101.678657

Tajima's D

0

CLR

0.046161

CSRT

0.36023198840058

Interpretation

Uncertain