Gene

KWMTBOMO03245  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013594

Annotation

Splicing_factor_3A_subunit_1_[Papilio_xuthus]

Location

Bomo_Chr6(+):2348029-2358237      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.248 Nuclear   Reliability : 1.798

CDS

ATGCCATCTATAGATGTAATGCTACCACCGGGGCAGTCGTTAGAGATCCCGGAAGATCCGCCTCCACCACCCCCTCCAGTCATTGGCATTATTTATCCACCACCTGAAGTCAGAAATATTGTTGATAAAACTGCCAGCTTTGTGGCTCGTAATGGTCCTGAATTTGAAGCTAGGATCAGACAGAATGAGCTGGGCAATCCAAAGTTCAACTTCCTTAATTCAGGGGATCCCTACCATGCTTACTATCAGCATAAAGTCAGAGAGATCAAAGAGGGAAAAGTTCCCGAACCAACTGCACCACCAACTATGCCATCAGGACAGCAACGAATGGGTCTCGCTCCAGCCACAGCGGCCCGCCAGCAGGAGCTCCTCAAGGCAGCTGCTCCTGCAGAACTGCCTCCGCCGCGCGACCCACCACCAGATTTCGAATTTATCGCTGATCCACCGTCTATATCGGCTCTGGAGCTCGACATAGTGAAATTAACCGCGCAATTTGTCGCCAGAAACGGTCGTCAGTTCTTAACGGATTTAATGAAGAAAGAGGAGCGTAATCATCAGTTTGATTTTCTTCGTCCCCAGCATTCACTGTTCCAATACTTCACGCGTCTGCTTGAGCAGTACACGAAGGTGTTGCTGCCGCCAAAAGAACTAGTATCAAAGCTGAATGCTGAGATACGCAGCGGGATATTAGAACAAGCTCGCAGTCGCGCTGCCTGGCACGCGCACCAAGCCAAGCGCAAGGCCGCTGACGAGGCCAAAATTGAGAAAGAGAGGCTCGCGTATGCCTCCATAGACTGGCACGATTTTGTCGTTGTTGAAACTGTAGATTACCCCGCAGGGGAACCCGGAGACTTCCCTCCTCCGACCACTCCACTAGAAGTCGGAGCCCGCGTCCTCGCCCAAGAGAGGGGTGAAGATATAATACGGAACCAGAATGACGACGATGATACTGAGATGCAAATTGAATCCGAATCGGAATCGGAGTCTGATGAGGAACTTGCGGAAATGGAGGATCGAACTCAGTCCCATCGGCCGGACGATAACCGCGTGCAAGACATGGAAGAGGAAAGCTCGACTTCGGAGTCCGAGACGGAGCAAGACGCCCCGCGCGCGGACGAGGCGCCCCTCCCGCCGCGCCCCGACCGCGTCGTCGTCAAGAAGTACAACCCCAAGGAGGCGAAGCCCCGCGCCGCCGCCGGGGACGAGTGGCTCGTGTCGCCCATCACCGGCGAGAAGATCCCCGCCAGCAAGGTGGCCGAGCACGTGCGCATCGGGCTGCTGGACCCGCGCTGGCTGGAGCAGCGGGACCGCGCCGCCGCCGAGCGCACCGACCGGGACGAGGCGCTCGCCCCCGGGGCCGCCATCGAGGCTTCGCTTAAACAGTTGGCGGAGCGTCGTACTGACATCTTCGGTGTAGGGGACGAGGAAACGACCATCGGTAAGAAGATCGGCGAGGAGGAGAAGAAGCGCGACGAGCGCGTGACGTGGGACGGGCACACCTCCAGCGTGGAGGCCGCCACCCGCGCCGCCAGGGCGCACATCACGCTCGAGGACCAGATCCAGCAGATACACAAGGTTAAAGGTCTACTCCCCGACGAGGAGAAAGAGAAAATAGGTCCGAAGCCAGTGACCGGGGCAGCCCAGAGCCGGGCGGGGCGTCCCCCCGCGCCCCCCTCTGCCCCCCGCGCTGCTCCGCCTCCCCCGCCCCCGGCACCGCCTGTGCTGCTGCAGCCGATGTCCTCGCTAATGGTCCTGCCCCCCATGGCGCCCCGACCTCCGCTCATACCGGCTCCAGTGGGTGCAGTACCACCGCCGGCGTTCAACTTCGGAGCGGTAGTCCCTCCGGGCACAGTGGCGGAGCCCGAGGACGAGGGCCCGGCCGCTAAGAGAGCCCGCACCGAGGACGCGCTGGAGCCCGAGGGCGCCTGGCTCGCGCGCCACCCCGGCGCAGTCCCCCTGCAGGTGTCGTTGCCGGCGGCGCCTGAGCGCGCGGAGTGGCGGCTGGACGGGCGCGCGGTGCCGCTGACGCTGCCGCTGTCGGCCGCCGTCGCCGAGCTCAAGGCCATGCTGCAGCGCGCCACCAACATGCCCACCGCCAAGCAGAAGCTGCACTACGAGGGTCTGTTCTTCAAGGATACTAACAGCTTGGCGTACTACAACGTGCCCCCGGGTGCCGTCATACAGCTACAGATCAAGGAACGAGGCGGTAGAAAGAAATAA

Protein

MPSIDVMLPPGQSLEIPEDPPPPPPPVIGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNSGDPYHAYYQHKVREIKEGKVPEPTAPPTMPSGQQRMGLAPATAARQQELLKAAAPAELPPPRDPPPDFEFIADPPSISALELDIVKLTAQFVARNGRQFLTDLMKKEERNHQFDFLRPQHSLFQYFTRLLEQYTKVLLPPKELVSKLNAEIRSGILEQARSRAAWHAHQAKRKAADEAKIEKERLAYASIDWHDFVVVETVDYPAGEPGDFPPPTTPLEVGARVLAQERGEDIIRNQNDDDDTEMQIESESESESDEELAEMEDRTQSHRPDDNRVQDMEEESSTSESETEQDAPRADEAPLPPRPDRVVVKKYNPKEAKPRAAAGDEWLVSPITGEKIPASKVAEHVRIGLLDPRWLEQRDRAAAERTDRDEALAPGAAIEASLKQLAERRTDIFGVGDEETTIGKKIGEEEKKRDERVTWDGHTSSVEAATRAARAHITLEDQIQQIHKVKGLLPDEEKEKIGPKPVTGAAQSRAGRPPAPPSAPRAAPPPPPPAPPVLLQPMSSLMVLPPMAPRPPLIPAPVGAVPPPAFNFGAVVPPGTVAEPEDEGPAAKRARTEDALEPEGAWLARHPGAVPLQVSLPAAPERAEWRLDGRAVPLTLPLSAAVAELKAMLQRATNMPTAKQKLHYEGLFFKDTNSLAYYNVPPGAVIQLQIKERGGRKK

Similarity

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.

Uniprot

A0A2H1VZX9   A0A212EM12   H9JVN1   A0A194Q1L6   A0A0N1IFR8   A0A1B0CAM5   + More
A0A1B0DEF2   A0A1L8DHC8   A0A0A9WXZ4   A0A0L0CQX4   A0A1B6CAA6   B0X8P5   A0A1B6H5H2   A0A084WCJ8   A0A2M4A443   A0A2M4BDT0   A0A1I8MY99   T1P7P7   A0A2M4BDS9   W5JSY5   B4NKJ9   A0A1I8Q357   Q297I7   B4KBM1   A0A2H8TVU8   A0A182MIT1   A0A0K8UKL3   A0A2S2NUU2   A0A0K8V196   A0A0A1WH51   W8C6H1   X1WRJ0   B4JHD7   A0A3B0K5A4   A0A1A9W587   A0A182Y6Z8   A0A182TYT8   A0A1Y9G8G6   A0A1B0AWJ9   A0A182RLJ9   A0A1A9Y5Y7   A0A158NLL3   A0A0K8UD64   A0A1A9Z7E6   A0A1Q3F5M0   A0A1A9V514   A0A2C9H8L5   A0A182LHA9   A0A182P2N1   A0A182H8J0   A0A1S4G009   A0A195B1P3   A0A0M8ZY16   Q16I26   A0A2A3ERQ6   A0A088AG06   A0A182Q9X0   A0A195F1X0   E9IJM9   F4WW66   A0A154NWS3   A0A182W1L7   A0A026WIG0   A0A182N3D1   A0A182HY57   A0A195CY75   A0A0L7QLN1   A0A151XCD9   A0A195E7C7   A0A0M4ENF6   J9JNE8   A0A310S558   E2C1B8   A0A2J7QUB2   K7ISL9   A0A067QI32   E2ATB4   A0A0J7KIW8   A0A182K806   A0A1B0FFR5   K7ISL2   A0A1J1J2X1   A0A0C9PSK9   A0A232EZM1  

Pubmed

22118469    19121390    26354079    25401762    26823975    26108605    + More
24438588    25315136    20920257    23761445    17994087    15632085    25830018    24495485    25244985    21347285    20966253    26483478    17510324    21282665    21719571    24508170    30249741    20798317    20075255    24845553    28648823   

EMBL

ODYU01005188    SOQ45804.1    AGBW02013960    OWR42516.1    BABH01032330    KQ459579    + More
KPI99472.1    KQ460650    KPJ13139.1    AJWK01004114    AJVK01032689    AJVK01032690    AJVK01032691    GFDF01008330    JAV05754.1    GBHO01030257    GDHC01001250    JAG13347.1    JAQ17379.1    JRES01000032    KNC34780.1    GEDC01026882    JAS10416.1    DS232495    EDS42637.1    GECU01037765    JAS69941.1    ATLV01022681    KE525335    KFB47942.1    GGFK01002252    MBW35573.1    GGFJ01002068    MBW51209.1    KA644504    AFP59133.1    GGFJ01002069    MBW51210.1    ADMH02000540    ETN66040.1    CH964272    EDW85171.2    CM000070    EAL28218.2    CH933806    EDW13688.1    GFXV01006589    MBW18394.1    AXCM01006132    GDHF01025231    GDHF01005979    JAI27083.1    JAI46335.1    GGMR01008278    MBY20897.1    GDHF01022549    GDHF01019688    JAI29765.1    JAI32626.1    GBXI01015948    GBXI01005256    JAC98343.1    JAD09036.1    GAMC01008541    JAB98014.1    ABLF02040727    CH916369    EDV93844.1    OUUW01000007    SPP83190.1    JXJN01004810    ADTU01019338    GDHF01028024    JAI24290.1    GFDL01012185    JAV22860.1    JXUM01118578    KQ566202    KXJ70321.1    KQ976662    KYM78413.1    KQ435801    KOX73257.1    CH478115    EAT33916.1    KZ288197    PBC33721.1    AXCN02001111    KQ981864    KYN34376.1    GL763877    EFZ19216.1    GL888404    EGI61537.1    KQ434773    KZC04012.1    KK107185    QOIP01000012    EZA55800.1    RLU15751.1    APCN01004493    KQ977115    KYN05620.1    KQ414914    KOC59537.1    KQ982314    KYQ58032.1    KQ979568    KYN20762.1    CP012526    ALC47140.1    ABLF02014752    KQ771002    OAD52554.1    GL451914    EFN78280.1    NEVH01011186    PNF32165.1    KK853363    KDR08142.1    GL442545    EFN63359.1    LBMM01006981    KMQ90146.1    CCAG010018629    CVRI01000064    CRL05201.1    GBYB01004323    GBYB01010738    JAG74090.1    JAG80505.1    NNAY01001464    OXU23884.1   

Proteomes

UP000007151    UP000005204    UP000053268    UP000053240    UP000092461    UP000092462    + More
UP000037069    UP000002320    UP000030765    UP000095301    UP000000673    UP000007798    UP000095300    UP000001819    UP000009192    UP000075883    UP000007819    UP000001070    UP000268350    UP000091820    UP000076408    UP000075902    UP000069272    UP000092460    UP000075900    UP000092443    UP000005205    UP000092445    UP000078200    UP000076407    UP000075882    UP000075885    UP000069940    UP000249989    UP000078540    UP000053105    UP000008820    UP000242457    UP000005203    UP000075886    UP000078541    UP000007755    UP000076502    UP000075920    UP000053097    UP000279307    UP000075884    UP000075840    UP000078542    UP000053825    UP000075809    UP000078492    UP000092553    UP000008237    UP000235965    UP000002358    UP000027135    UP000000311    UP000036403    UP000075881    UP000092444    UP000183832    UP000215335   

PRIDE

H9JVN1   

Pfam

PF12230   PRP21_like_P        + More
PF01805   Surp
PF00240   ubiquitin
PF00225   Kinesin
PF05148   Methyltransf_8

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR000061   Surp       
IPR035967   SWAP/Surp_sf       
IPR000626   Ubiquitin_dom       
IPR022030   SF3A1       
IPR008984   SMAD_FHA_dom_sf       
IPR000253   FHA_dom       
IPR019821   Kinesin_motor_CS       
IPR027417   P-loop_NTPase       
IPR001752   Kinesin_motor_dom       
IPR027640   Kinesin-like_fam       
IPR036961   Kinesin_motor_dom_sf       
IPR035563   SF3As1_ubi       
IPR019956   Ubiquitin       
IPR029063   SAM-dependent_MTases       
IPR007823   RRP8       
IPR042036   RRP8_N       

SUPFAM

SSF54236   SSF54236        + More
SSF109905   SSF109905       
SSF49879   SSF49879       
SSF52540   SSF52540       
SSF53335   SSF53335       

Gene 3D

1.10.10.790     3.40.850.10     1.10.10.2150    

CDD

cd00060  FHA
cd01800  SF3a120_C

ProteinModelPortal

A0A2H1VZX9   A0A212EM12   H9JVN1   A0A194Q1L6   A0A0N1IFR8   A0A1B0CAM5   + More
A0A1B0DEF2   A0A1L8DHC8   A0A0A9WXZ4   A0A0L0CQX4   A0A1B6CAA6   B0X8P5   A0A1B6H5H2   A0A084WCJ8   A0A2M4A443   A0A2M4BDT0   A0A1I8MY99   T1P7P7   A0A2M4BDS9   W5JSY5   B4NKJ9   A0A1I8Q357   Q297I7   B4KBM1   A0A2H8TVU8   A0A182MIT1   A0A0K8UKL3   A0A2S2NUU2   A0A0K8V196   A0A0A1WH51   W8C6H1   X1WRJ0   B4JHD7   A0A3B0K5A4   A0A1A9W587   A0A182Y6Z8   A0A182TYT8   A0A1Y9G8G6   A0A1B0AWJ9   A0A182RLJ9   A0A1A9Y5Y7   A0A158NLL3   A0A0K8UD64   A0A1A9Z7E6   A0A1Q3F5M0   A0A1A9V514   A0A2C9H8L5   A0A182LHA9   A0A182P2N1   A0A182H8J0   A0A1S4G009   A0A195B1P3   A0A0M8ZY16   Q16I26   A0A2A3ERQ6   A0A088AG06   A0A182Q9X0   A0A195F1X0   E9IJM9   F4WW66   A0A154NWS3   A0A182W1L7   A0A026WIG0   A0A182N3D1   A0A182HY57   A0A195CY75   A0A0L7QLN1   A0A151XCD9   A0A195E7C7   A0A0M4ENF6   J9JNE8   A0A310S558   E2C1B8   A0A2J7QUB2   K7ISL9   A0A067QI32   E2ATB4   A0A0J7KIW8   A0A182K806   A0A1B0FFR5   K7ISL2   A0A1J1J2X1   A0A0C9PSK9   A0A232EZM1  

PDB

6FF7     E-value=3.99116e-111,     Score=1029

KEGG

101738204    K12825 splicing factor 3A subunit 1 | (RefSeq) splicing factor 3A subunit 1

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0006396   GO:0003723   GO:0003777   GO:0005524   GO:0008017   GO:0007018   GO:0007283   GO:0005730   GO:0008168   GO:0005515   GO:0005886   GO:0007155   GO:0003678   GO:0005634   GO:0006270   GO:0042555   GO:0048384  

PANTHER

PTHR24115  

Length:

739

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01397

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00002

outside

1  -  739

 

 

Pi

248.92546

Theta

214.130714

Tajima's D

0.40209

CLR

0.228864

CSRT

0.482225888705565

Interpretation

Uncertain