SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03240
Pre Gene Modal
BGIBMGA013621
Annotation
Uncharacterized_protein_OBRU01_01978_[Operophtera_brumata]
Location
Bomo_Chr6(-):2246236-2252498      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 4.42
 

Sequence

CDS
ATGATGTCTCAGTGCTTTTTAAGGAGCATGAAGTGTGATGGCAACGATTCGAAGCCGCCTGCGGTTAAAGAAAAAGTTATGGCTTACGAGGAGAAAACCGTAGGTAGCACTCCCTTTTTCAAATGCGAAGCGTGTCCTTACATGGCTCTAGCTGAAGACGACATTAAATTTCATCTGTTCACTGTGCACCCGGAGCTCGCGAAAACTAACGGTCTTGCGGATAACATACATATCCAATGCCCAGGCTGCACTGACGTCTTCGAAACCGAAGAAACATTGCGGACGCACCTACGTAACCATCACAAAATGGGAATCAAAGACGTAAAGAAAATGATAAAAAGCCTCGTACAGATTGCCTTAAAAAATGCGAAATTAAAAAAGGAAAATAACGATACATCACAGTCCGCAAACACCCAGAGTGTTGACATTAAAATACCACAAGTATTCGAAATAGTCTCTGATGCCAACTCCGCAAACGCCCTACCCAAAGCTGTAGCTTTCATATCAGTCGATGAGTTACAGAAAATGAGCACGCCAAATTTCGAGAATGTAGATCCTAAAGAAATAATTCAAGAGGCAAGCATTAACATTGTATATACTAATGAAGTATCCACGCAGTATGTAAACGTAGCTGAAAATGGCACATCAAACTCTCCTTGTAATGTCATTCAAGTATCAAATGTACCCCCAGATTTGATATCGTCAATACAACCTAGAATACAAACTACAGATAGTGCAAAAATACCCCAACCTCAACGAGAAGCAGAAACAATTACACCACCACATATCAGACAAGAAGAGCTAAGAGAACAGTCGGACTCGCAACAGAAACCAGTGAAGGAACTAGGCACAATGTGCTCAATCGCAGGATGTCAAATACGTTTAAGAGATGAAAATAACCTATCATACCACAGGAAAAGTCATCAGAGCGGGAAATTAATATGTCAAGAATGTATGAAAACATTCCTCAATGTAGACTCCCTACACAGTCACTTGTGGAAAGTACACACAATAGACTTGGAGCTGCCGACGTGTGAAATATGCGGCTTTAAAACATACAAAAAACATAGATTGCATAATATACATATGAAAATCCATGGGAAATTAAAATTGTGTCTTTGTCCAATATGTTCGAAATCATTCAAGAATGCAAATCAATTGTCAAAACATAAATTAACACACAAAAAAGACACATCGCCCCTGAAGTGTCCGATATGCCCTCGGGAGTTCAGCAACGGCAGGCAACTAAGAGAGCATGTCACAGCGGTTCATGAAAAACTGAAGCCATACAAATGCCAACATTGTGACTATACTGCAGCTCGTAAAGGAGAGATGAAGTTACATATGAGATCTCATACAGGCGACAAACCGTACTCCTGCAACATTTGCAGCTACAGGTCCGCGGACCACAACGCAATGCGCAGACACAAGAAAATGCATTCTAAAGAAGGCGTCTACAAATGCAAGCACTGCCCTTATACATCGATTCAATCTACATCTTTTGCCTACCACATGATGTCCAGACACCCCAAATTAAGTTCGATAGAATTACATAGGTGTCCCTACTGCTCTTTCAAATCAATAAACAAGGATAAGTATGTCACGCATTTGACCAACCACGCCGACAAAGAGGGAGTCCAATTATTATTAGAAATGGCGAAAGGGATGAAATCGAACAAACTTAGCTGGACCATACCAAGTGAAACGGAAAAAAACGTCCAAGAGAACGATGAAGGTTTGAACGATGCTTCGAAAACGGTTAACGAAATTCCTATAGAAGTTTATGATTGTGACAGTCTATCCGAAGGTATACCGCAAGATTATTCGAAGAATTACTGCGCAACGGCTACAAATGAAGTGGAACCATCGAGCTACGACACTCAGACTTTGGGATCGCACGTAAACAAAGAAGACAATAACTCTGATTGCATTATATCCGAAAGCTCAAACGATACTGTGGTCAATAGACATCAATACGTGCCGCAGCATTTGCAGATATCGTTCGAGAACAATGACTCGAATCTGCACTTCCTCAATCCGTCCGTTTCGTTGGAACAAAGCATTCTACAGGACAACAACGTGAATTCGCTTGCGCCAATCACATTAGCCAATGACTTGAGCAATAACATTATGAGTCCGGACCAAGTGAACATGTTTCATTCACAGCAGAAGATGGCCTTTAGAAGGCTAGAAGATAATGAGAGATACGGCCTTGGAGGGCCAGTTACTTTTAATAACTTGATTACTACACAGTTTATGTTACCACCGCAGTCCAATTTAGGCGAGCCAGCGACGGATATGATGTCGTATCCTCAAGAAGGTTTAATGTCAGATTCGACACCCACGCCAAGCGATTCTGGTATAGCTGAAGACTCTCAAATGTTCTCATTTAATTCGCCAATTAACGTTAATTCCATTAACATGCTTCAGACCTCTGAAAAGATTCAAAACAGCGATCCGAGCTACATTAAACTGGAGGCAACTATTAAGCAGAACACGCAATCTCCTAGCTTAGAGCGCATGTGCAACGCTAATATACTTAATAACCCGGCTATGACCAGAGAGTACAAAGCCTCTCCGCCTTTAGAAGATATACACAAGAACATGAATGAGATAAAAAACGAAGTGAAATCGGATTCATTTTACAACATAGCTCTAAATACCACGGCAGTAAATCCACCGATAATAGAACAGTTTCTTATAGACAATATAATGGGAGAACAGTACTCTGGACATATGGACTTACCAAACACCTTGATACAGGATTTGCCTGAATTGGAAGATGATGTCATCGAGATAGACGACAATTCTGACGACAACAAATTGCTCCCGCGTTTCGACATGAACAATTTCCATTTGGAATCTTTGTGTTCTATGCACAACGATTATCATTTCTTGGAAAGCGAGTCCGGTCCGAACAAGGTTCCCGCTGATCTGACGGTGGCCGACATGAATAGAATGGTACAGGAGGTGCCGATCATAAATCAAAAAGACAATTCAAAAATTCCGAATGACGTTGCGAATGGTGATTTTGTGTATTTTATTCAAGGGAAAAACGATCCAATGATGAACACGTCAGTGCGACAAACGACTAACAAAATAAACGTAAAGAACATTGAACTTATGAAGAATTAA
Protein
MMSQCFLRSMKCDGNDSKPPAVKEKVMAYEEKTVGSTPFFKCEACPYMALAEDDIKFHLFTVHPELAKTNGLADNIHIQCPGCTDVFETEETLRTHLRNHHKMGIKDVKKMIKSLVQIALKNAKLKKENNDTSQSANTQSVDIKIPQVFEIVSDANSANALPKAVAFISVDELQKMSTPNFENVDPKEIIQEASINIVYTNEVSTQYVNVAENGTSNSPCNVIQVSNVPPDLISSIQPRIQTTDSAKIPQPQREAETITPPHIRQEELREQSDSQQKPVKELGTMCSIAGCQIRLRDENNLSYHRKSHQSGKLICQECMKTFLNVDSLHSHLWKVHTIDLELPTCEICGFKTYKKHRLHNIHMKIHGKLKLCLCPICSKSFKNANQLSKHKLTHKKDTSPLKCPICPREFSNGRQLREHVTAVHEKLKPYKCQHCDYTAARKGEMKLHMRSHTGDKPYSCNICSYRSADHNAMRRHKKMHSKEGVYKCKHCPYTSIQSTSFAYHMMSRHPKLSSIELHRCPYCSFKSINKDKYVTHLTNHADKEGVQLLLEMAKGMKSNKLSWTIPSETEKNVQENDEGLNDASKTVNEIPIEVYDCDSLSEGIPQDYSKNYCATATNEVEPSSYDTQTLGSHVNKEDNNSDCIISESSNDTVVNRHQYVPQHLQISFENNDSNLHFLNPSVSLEQSILQDNNVNSLAPITLANDLSNNIMSPDQVNMFHSQQKMAFRRLEDNERYGLGGPVTFNNLITTQFMLPPQSNLGEPATDMMSYPQEGLMSDSTPTPSDSGIAEDSQMFSFNSPINVNSINMLQTSEKIQNSDPSYIKLEATIKQNTQSPSLERMCNANILNNPAMTREYKASPPLEDIHKNMNEIKNEVKSDSFYNIALNTTAVNPPIIEQFLIDNIMGEQYSGHMDLPNTLIQDLPELEDDVIEIDDNSDDNKLLPRFDMNNFHLESLCSMHNDYHFLESESGPNKVPADLTVADMNRMVQEVPIINQKDNSKIPNDVANGDFVYFIQGKNDPMMNTSVRQTTNKINVKNIELMKN

Summary

Uniprot
A0A0L7LQA4   A0A194Q7U4   A0A212FH80   A0A1E1W141  
Pubmed
26227816    26354079    22118469   
EMBL
JTDY01000347    KOB77594.1    KQ459579    KPI99480.1    AGBW02008522    OWR53092.1    + More
GDQN01010371    JAT80683.1   
Proteomes
UP000037510    UP000053268    UP000007151   
Pfam
PF00096   zf-C2H2
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667       
ProteinModelPortal
A0A0L7LQA4   A0A194Q7U4   A0A212FH80   A0A1E1W141  
PDB
5YEF     E-value=5.84566e-24,     Score=279

Ontologies

KEGG
101743590    no KO assigned | (RefSeq) zinc finger protein 57-like
GO
GO:0003676   GO:0046872   GO:0006260   GO:0015074   GO:0003678   GO:0005634   GO:0006270   GO:0042555   GO:0048384  

Topology

Length:
1044
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00036
Exp number, first 60 AAs:
0.00036
Total prob of N-in:
0.00002
outside
1  -  1044
 
 

Population Genetic Test Statistics

Pi
160.403067
Theta
155.085928
Tajima's D
-0.577945
CLR
0.143884
CSRT
0.227088645567722
Interpretation
Uncertain
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